Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03813 and SMc03814 are separated by 38 nucleotides SMc03814 and SMc03815 are separated by 17 nucleotides SMc03815 and SMc03816 are separated by 128 nucleotides
SMc03813: SMc03813 - periplasmic binding ABC transporter protein, at 3,480,151 to 3,481,164
SMc03813
SMc03814: SMc03814 - ABC transporter permease, at 3,481,203 to 3,482,210
SMc03814
SMc03815: SMc03815 - ABC transporter ATP-binding protein, at 3,482,228 to 3,483,007
SMc03815
SMc03816: SMc03816 - transcriptional regulator, at 3,483,136 to 3,484,338
SMc03816
Position (kb)
3481
3482
3483 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3480.275 kb on + strand, within SMc03813 at 3480.287 kb on + strand, within SMc03813 at 3480.308 kb on + strand, within SMc03813 at 3480.308 kb on + strand, within SMc03813 at 3480.316 kb on + strand, within SMc03813 at 3480.420 kb on + strand, within SMc03813 at 3480.420 kb on + strand, within SMc03813 at 3480.420 kb on + strand, within SMc03813 at 3480.421 kb on - strand, within SMc03813 at 3480.421 kb on - strand, within SMc03813 at 3480.421 kb on - strand, within SMc03813 at 3480.421 kb on - strand, within SMc03813 at 3480.422 kb on + strand, within SMc03813 at 3480.423 kb on - strand, within SMc03813 at 3480.437 kb on + strand, within SMc03813 at 3480.471 kb on + strand, within SMc03813 at 3480.471 kb on + strand, within SMc03813 at 3480.540 kb on - strand, within SMc03813 at 3480.749 kb on + strand, within SMc03813 at 3480.749 kb on + strand, within SMc03813 at 3480.750 kb on - strand, within SMc03813 at 3480.767 kb on + strand, within SMc03813 at 3480.767 kb on + strand, within SMc03813 at 3480.799 kb on + strand, within SMc03813 at 3480.799 kb on + strand, within SMc03813 at 3480.835 kb on - strand, within SMc03813 at 3480.835 kb on - strand, within SMc03813 at 3480.953 kb on + strand, within SMc03813 at 3480.953 kb on + strand, within SMc03813 at 3480.953 kb on + strand, within SMc03813 at 3480.971 kb on + strand, within SMc03813 at 3480.972 kb on - strand, within SMc03813 at 3480.972 kb on - strand, within SMc03813 at 3480.972 kb on - strand, within SMc03813 at 3480.972 kb on - strand, within SMc03813 at 3480.972 kb on - strand, within SMc03813 at 3480.981 kb on + strand, within SMc03813 at 3480.982 kb on - strand, within SMc03813 at 3480.982 kb on - strand, within SMc03813 at 3480.982 kb on - strand, within SMc03813 at 3481.245 kb on + strand at 3481.323 kb on + strand, within SMc03814 at 3481.392 kb on + strand, within SMc03814 at 3481.480 kb on - strand, within SMc03814 at 3481.507 kb on + strand, within SMc03814 at 3481.507 kb on + strand, within SMc03814 at 3481.648 kb on + strand, within SMc03814 at 3481.648 kb on + strand, within SMc03814 at 3481.648 kb on + strand, within SMc03814 at 3481.648 kb on + strand, within SMc03814 at 3481.648 kb on + strand, within SMc03814 at 3481.648 kb on + strand, within SMc03814 at 3481.649 kb on - strand, within SMc03814 at 3481.649 kb on - strand, within SMc03814 at 3481.659 kb on - strand, within SMc03814 at 3481.674 kb on - strand, within SMc03814 at 3481.674 kb on - strand, within SMc03814 at 3481.676 kb on - strand, within SMc03814 at 3481.813 kb on + strand, within SMc03814 at 3481.813 kb on + strand, within SMc03814 at 3481.838 kb on + strand, within SMc03814 at 3481.955 kb on + strand, within SMc03814 at 3481.956 kb on - strand, within SMc03814 at 3481.956 kb on - strand, within SMc03814 at 3481.956 kb on - strand, within SMc03814 at 3481.956 kb on - strand, within SMc03814 at 3482.000 kb on + strand, within SMc03814 at 3482.099 kb on + strand, within SMc03814 at 3482.133 kb on + strand at 3482.134 kb on - strand at 3482.471 kb on - strand, within SMc03815 at 3482.589 kb on - strand, within SMc03815 at 3482.672 kb on + strand, within SMc03815 at 3482.673 kb on - strand, within SMc03815 at 3482.719 kb on - strand, within SMc03815 at 3482.719 kb on - strand, within SMc03815 at 3482.719 kb on - strand, within SMc03815 at 3482.729 kb on + strand, within SMc03815 at 3482.790 kb on + strand, within SMc03815 at 3482.790 kb on + strand, within SMc03815 at 3482.790 kb on + strand, within SMc03815 at 3482.791 kb on - strand, within SMc03815 at 3482.791 kb on - strand, within SMc03815 at 3482.791 kb on - strand, within SMc03815 at 3482.979 kb on - strand at 3483.051 kb on + strand at 3483.052 kb on - strand at 3483.052 kb on - strand at 3483.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 3,480,275 + SMc03813 0.12 +0.2 3,480,287 + SMc03813 0.13 -0.2 3,480,308 + SMc03813 0.15 -0.4 3,480,308 + SMc03813 0.15 -1.5 3,480,316 + SMc03813 0.16 -0.6 3,480,420 + SMc03813 0.27 -0.2 3,480,420 + SMc03813 0.27 +0.1 3,480,420 + SMc03813 0.27 +0.9 3,480,421 - SMc03813 0.27 -0.2 3,480,421 - SMc03813 0.27 -1.4 3,480,421 - SMc03813 0.27 -0.2 3,480,421 - SMc03813 0.27 -0.3 3,480,422 + SMc03813 0.27 -0.5 3,480,423 - SMc03813 0.27 -1.7 3,480,437 + SMc03813 0.28 -3.1 3,480,471 + SMc03813 0.32 -1.4 3,480,471 + SMc03813 0.32 +0.3 3,480,540 - SMc03813 0.38 +0.1 3,480,749 + SMc03813 0.59 -1.2 3,480,749 + SMc03813 0.59 -0.5 3,480,750 - SMc03813 0.59 -0.6 3,480,767 + SMc03813 0.61 -1.8 3,480,767 + SMc03813 0.61 -0.2 3,480,799 + SMc03813 0.64 -2.4 3,480,799 + SMc03813 0.64 -1.0 3,480,835 - SMc03813 0.67 -0.3 3,480,835 - SMc03813 0.67 +0.3 3,480,953 + SMc03813 0.79 -1.3 3,480,953 + SMc03813 0.79 +0.3 3,480,953 + SMc03813 0.79 +2.1 3,480,971 + SMc03813 0.81 +2.3 3,480,972 - SMc03813 0.81 -0.3 3,480,972 - SMc03813 0.81 -0.8 3,480,972 - SMc03813 0.81 +0.1 3,480,972 - SMc03813 0.81 -0.1 3,480,972 - SMc03813 0.81 -0.1 3,480,981 + SMc03813 0.82 +0.8 3,480,982 - SMc03813 0.82 -1.9 3,480,982 - SMc03813 0.82 -0.3 3,480,982 - SMc03813 0.82 -0.6 3,481,245 + +0.3 3,481,323 + SMc03814 0.12 +0.1 3,481,392 + SMc03814 0.19 -1.1 3,481,480 - SMc03814 0.27 +0.1 3,481,507 + SMc03814 0.30 -0.5 3,481,507 + SMc03814 0.30 +0.2 3,481,648 + SMc03814 0.44 +0.5 3,481,648 + SMc03814 0.44 -0.4 3,481,648 + SMc03814 0.44 +2.5 3,481,648 + SMc03814 0.44 -0.1 3,481,648 + SMc03814 0.44 +0.2 3,481,648 + SMc03814 0.44 +0.2 3,481,649 - SMc03814 0.44 -0.1 3,481,649 - SMc03814 0.44 -0.1 3,481,659 - SMc03814 0.45 -0.6 3,481,674 - SMc03814 0.47 -3.1 3,481,674 - SMc03814 0.47 -3.9 3,481,676 - SMc03814 0.47 +1.8 3,481,813 + SMc03814 0.61 +0.0 3,481,813 + SMc03814 0.61 -0.2 3,481,838 + SMc03814 0.63 +0.5 3,481,955 + SMc03814 0.75 -0.6 3,481,956 - SMc03814 0.75 -1.5 3,481,956 - SMc03814 0.75 -1.9 3,481,956 - SMc03814 0.75 -0.7 3,481,956 - SMc03814 0.75 +0.0 3,482,000 + SMc03814 0.79 -3.1 3,482,099 + SMc03814 0.89 +0.3 3,482,133 + -0.2 3,482,134 - -2.0 3,482,471 - SMc03815 0.31 -1.3 3,482,589 - SMc03815 0.46 -0.1 3,482,672 + SMc03815 0.57 +0.2 3,482,673 - SMc03815 0.57 -0.2 3,482,719 - SMc03815 0.63 +0.2 3,482,719 - SMc03815 0.63 -0.5 3,482,719 - SMc03815 0.63 -1.7 3,482,729 + SMc03815 0.64 -0.0 3,482,790 + SMc03815 0.72 -0.7 3,482,790 + SMc03815 0.72 -0.6 3,482,790 + SMc03815 0.72 -0.7 3,482,791 - SMc03815 0.72 -0.7 3,482,791 - SMc03815 0.72 -2.0 3,482,791 - SMc03815 0.72 +0.1 3,482,979 - -0.3 3,483,051 + -0.3 3,483,052 - +0.5 3,483,052 - +0.7 3,483,052 - -0.6
Or see this region's nucleotide sequence