Strain Fitness in Sinorhizobium meliloti 1021 around SMc03814

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03813 and SMc03814 are separated by 38 nucleotidesSMc03814 and SMc03815 are separated by 17 nucleotidesSMc03815 and SMc03816 are separated by 128 nucleotides SMc03813: SMc03813 - periplasmic binding ABC transporter protein, at 3,480,151 to 3,481,164 SMc03813 SMc03814: SMc03814 - ABC transporter permease, at 3,481,203 to 3,482,210 SMc03814 SMc03815: SMc03815 - ABC transporter ATP-binding protein, at 3,482,228 to 3,483,007 SMc03815 SMc03816: SMc03816 - transcriptional regulator, at 3,483,136 to 3,484,338 SMc03816 Position (kb) 3481 3482 3483Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3480.275 kb on + strand, within SMc03813at 3480.287 kb on + strand, within SMc03813at 3480.308 kb on + strand, within SMc03813at 3480.308 kb on + strand, within SMc03813at 3480.316 kb on + strand, within SMc03813at 3480.420 kb on + strand, within SMc03813at 3480.420 kb on + strand, within SMc03813at 3480.420 kb on + strand, within SMc03813at 3480.421 kb on - strand, within SMc03813at 3480.421 kb on - strand, within SMc03813at 3480.421 kb on - strand, within SMc03813at 3480.421 kb on - strand, within SMc03813at 3480.422 kb on + strand, within SMc03813at 3480.423 kb on - strand, within SMc03813at 3480.437 kb on + strand, within SMc03813at 3480.471 kb on + strand, within SMc03813at 3480.471 kb on + strand, within SMc03813at 3480.540 kb on - strand, within SMc03813at 3480.749 kb on + strand, within SMc03813at 3480.749 kb on + strand, within SMc03813at 3480.750 kb on - strand, within SMc03813at 3480.767 kb on + strand, within SMc03813at 3480.767 kb on + strand, within SMc03813at 3480.799 kb on + strand, within SMc03813at 3480.799 kb on + strand, within SMc03813at 3480.835 kb on - strand, within SMc03813at 3480.835 kb on - strand, within SMc03813at 3480.953 kb on + strand, within SMc03813at 3480.953 kb on + strand, within SMc03813at 3480.953 kb on + strand, within SMc03813at 3480.971 kb on + strand, within SMc03813at 3480.972 kb on - strand, within SMc03813at 3480.972 kb on - strand, within SMc03813at 3480.972 kb on - strand, within SMc03813at 3480.972 kb on - strand, within SMc03813at 3480.972 kb on - strand, within SMc03813at 3480.981 kb on + strand, within SMc03813at 3480.982 kb on - strand, within SMc03813at 3480.982 kb on - strand, within SMc03813at 3480.982 kb on - strand, within SMc03813at 3481.245 kb on + strandat 3481.323 kb on + strand, within SMc03814at 3481.392 kb on + strand, within SMc03814at 3481.480 kb on - strand, within SMc03814at 3481.507 kb on + strand, within SMc03814at 3481.507 kb on + strand, within SMc03814at 3481.648 kb on + strand, within SMc03814at 3481.648 kb on + strand, within SMc03814at 3481.648 kb on + strand, within SMc03814at 3481.648 kb on + strand, within SMc03814at 3481.648 kb on + strand, within SMc03814at 3481.648 kb on + strand, within SMc03814at 3481.649 kb on - strand, within SMc03814at 3481.649 kb on - strand, within SMc03814at 3481.659 kb on - strand, within SMc03814at 3481.674 kb on - strand, within SMc03814at 3481.674 kb on - strand, within SMc03814at 3481.676 kb on - strand, within SMc03814at 3481.813 kb on + strand, within SMc03814at 3481.813 kb on + strand, within SMc03814at 3481.838 kb on + strand, within SMc03814at 3481.955 kb on + strand, within SMc03814at 3481.956 kb on - strand, within SMc03814at 3481.956 kb on - strand, within SMc03814at 3481.956 kb on - strand, within SMc03814at 3481.956 kb on - strand, within SMc03814at 3482.000 kb on + strand, within SMc03814at 3482.099 kb on + strand, within SMc03814at 3482.133 kb on + strandat 3482.134 kb on - strandat 3482.471 kb on - strand, within SMc03815at 3482.589 kb on - strand, within SMc03815at 3482.672 kb on + strand, within SMc03815at 3482.673 kb on - strand, within SMc03815at 3482.719 kb on - strand, within SMc03815at 3482.719 kb on - strand, within SMc03815at 3482.719 kb on - strand, within SMc03815at 3482.729 kb on + strand, within SMc03815at 3482.790 kb on + strand, within SMc03815at 3482.790 kb on + strand, within SMc03815at 3482.790 kb on + strand, within SMc03815at 3482.791 kb on - strand, within SMc03815at 3482.791 kb on - strand, within SMc03815at 3482.791 kb on - strand, within SMc03815at 3482.979 kb on - strandat 3483.051 kb on + strandat 3483.052 kb on - strandat 3483.052 kb on - strandat 3483.052 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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3,480,275 + SMc03813 0.12 +0.2
3,480,287 + SMc03813 0.13 -0.2
3,480,308 + SMc03813 0.15 -0.4
3,480,308 + SMc03813 0.15 -1.5
3,480,316 + SMc03813 0.16 -0.6
3,480,420 + SMc03813 0.27 -0.2
3,480,420 + SMc03813 0.27 +0.1
3,480,420 + SMc03813 0.27 +0.9
3,480,421 - SMc03813 0.27 -0.2
3,480,421 - SMc03813 0.27 -1.4
3,480,421 - SMc03813 0.27 -0.2
3,480,421 - SMc03813 0.27 -0.3
3,480,422 + SMc03813 0.27 -0.5
3,480,423 - SMc03813 0.27 -1.7
3,480,437 + SMc03813 0.28 -3.1
3,480,471 + SMc03813 0.32 -1.4
3,480,471 + SMc03813 0.32 +0.3
3,480,540 - SMc03813 0.38 +0.1
3,480,749 + SMc03813 0.59 -1.2
3,480,749 + SMc03813 0.59 -0.5
3,480,750 - SMc03813 0.59 -0.6
3,480,767 + SMc03813 0.61 -1.8
3,480,767 + SMc03813 0.61 -0.2
3,480,799 + SMc03813 0.64 -2.4
3,480,799 + SMc03813 0.64 -1.0
3,480,835 - SMc03813 0.67 -0.3
3,480,835 - SMc03813 0.67 +0.3
3,480,953 + SMc03813 0.79 -1.3
3,480,953 + SMc03813 0.79 +0.3
3,480,953 + SMc03813 0.79 +2.1
3,480,971 + SMc03813 0.81 +2.3
3,480,972 - SMc03813 0.81 -0.3
3,480,972 - SMc03813 0.81 -0.8
3,480,972 - SMc03813 0.81 +0.1
3,480,972 - SMc03813 0.81 -0.1
3,480,972 - SMc03813 0.81 -0.1
3,480,981 + SMc03813 0.82 +0.8
3,480,982 - SMc03813 0.82 -1.9
3,480,982 - SMc03813 0.82 -0.3
3,480,982 - SMc03813 0.82 -0.6
3,481,245 + +0.3
3,481,323 + SMc03814 0.12 +0.1
3,481,392 + SMc03814 0.19 -1.1
3,481,480 - SMc03814 0.27 +0.1
3,481,507 + SMc03814 0.30 -0.5
3,481,507 + SMc03814 0.30 +0.2
3,481,648 + SMc03814 0.44 +0.5
3,481,648 + SMc03814 0.44 -0.4
3,481,648 + SMc03814 0.44 +2.5
3,481,648 + SMc03814 0.44 -0.1
3,481,648 + SMc03814 0.44 +0.2
3,481,648 + SMc03814 0.44 +0.2
3,481,649 - SMc03814 0.44 -0.1
3,481,649 - SMc03814 0.44 -0.1
3,481,659 - SMc03814 0.45 -0.6
3,481,674 - SMc03814 0.47 -3.1
3,481,674 - SMc03814 0.47 -3.9
3,481,676 - SMc03814 0.47 +1.8
3,481,813 + SMc03814 0.61 +0.0
3,481,813 + SMc03814 0.61 -0.2
3,481,838 + SMc03814 0.63 +0.5
3,481,955 + SMc03814 0.75 -0.6
3,481,956 - SMc03814 0.75 -1.5
3,481,956 - SMc03814 0.75 -1.9
3,481,956 - SMc03814 0.75 -0.7
3,481,956 - SMc03814 0.75 +0.0
3,482,000 + SMc03814 0.79 -3.1
3,482,099 + SMc03814 0.89 +0.3
3,482,133 + -0.2
3,482,134 - -2.0
3,482,471 - SMc03815 0.31 -1.3
3,482,589 - SMc03815 0.46 -0.1
3,482,672 + SMc03815 0.57 +0.2
3,482,673 - SMc03815 0.57 -0.2
3,482,719 - SMc03815 0.63 +0.2
3,482,719 - SMc03815 0.63 -0.5
3,482,719 - SMc03815 0.63 -1.7
3,482,729 + SMc03815 0.64 -0.0
3,482,790 + SMc03815 0.72 -0.7
3,482,790 + SMc03815 0.72 -0.6
3,482,790 + SMc03815 0.72 -0.7
3,482,791 - SMc03815 0.72 -0.7
3,482,791 - SMc03815 0.72 -2.0
3,482,791 - SMc03815 0.72 +0.1
3,482,979 - -0.3
3,483,051 + -0.3
3,483,052 - +0.5
3,483,052 - +0.7
3,483,052 - -0.6

Or see this region's nucleotide sequence