Strain Fitness in Sinorhizobium meliloti 1021 around SMc02878

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02877 and SMc02878 overlap by 4 nucleotidesSMc02878 and SMc02879 are separated by 283 nucleotides SMc02877: SMc02877 - hypothetical protein, at 233,070 to 234,092 SMc02877 SMc02878: SMc02878 - N-acetylglucosamine-6-phosphate deacetylase, at 234,089 to 235,249 SMc02878 SMc02879: SMc02879 - hypothetical protein, at 235,533 to 236,270 SMc02879 Position (kb) 234 235 236Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 233.528 kb on + strand, within SMc02877at 233.528 kb on + strand, within SMc02877at 233.682 kb on + strand, within SMc02877at 233.682 kb on + strand, within SMc02877at 234.006 kb on + strandat 234.006 kb on + strandat 235.791 kb on - strand, within SMc02879at 236.069 kb on - strand, within SMc02879at 236.105 kb on - strand, within SMc02879

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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233,528 + SMc02877 0.45 -0.6
233,528 + SMc02877 0.45 -3.3
233,682 + SMc02877 0.60 -3.6
233,682 + SMc02877 0.60 +1.4
234,006 + -4.2
234,006 + -2.9
235,791 - SMc02879 0.35 +1.2
236,069 - SMc02879 0.73 +2.0
236,105 - SMc02879 0.78 +0.1

Or see this region's nucleotide sequence