Strain Fitness in Sinorhizobium meliloti 1021 around SMc02873

Experiment: D-Glucosamine Hydrochloride (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02872 and SMc02873 are separated by 268 nucleotidesSMc02873 and SMc02874 are separated by 55 nucleotides SMc02872: SMc02872 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 1 (from data), at 227,704 to 228,651 SMc02872 SMc02873: SMc02873 - N-Acetyl-D-glucosamine ABC transport system, periplasmic substrate-binding component (from data), at 228,920 to 230,179 SMc02873 SMc02874: SMc02874 - N-acetylmuramic acid 6-phosphate etherase, at 230,235 to 231,131 SMc02874 Position (kb) 228 229 230 231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 228.080 kb on + strand, within SMc02872at 228.105 kb on + strand, within SMc02872at 228.106 kb on - strand, within SMc02872at 228.107 kb on + strand, within SMc02872at 228.107 kb on + strand, within SMc02872at 228.107 kb on + strand, within SMc02872at 228.108 kb on - strand, within SMc02872at 228.108 kb on - strand, within SMc02872at 228.206 kb on + strand, within SMc02872at 228.206 kb on + strand, within SMc02872at 228.207 kb on - strand, within SMc02872at 228.207 kb on - strand, within SMc02872at 228.291 kb on + strand, within SMc02872at 228.302 kb on + strand, within SMc02872at 228.506 kb on + strand, within SMc02872at 228.506 kb on + strand, within SMc02872at 228.506 kb on + strand, within SMc02872at 228.507 kb on - strand, within SMc02872at 228.626 kb on + strandat 228.626 kb on + strandat 228.626 kb on + strandat 228.626 kb on + strandat 228.627 kb on - strandat 228.627 kb on - strandat 228.627 kb on - strandat 228.922 kb on - strandat 229.040 kb on - strandat 229.066 kb on - strand, within SMc02873at 229.185 kb on + strand, within SMc02873at 229.294 kb on + strand, within SMc02873at 229.295 kb on - strand, within SMc02873at 229.295 kb on - strand, within SMc02873at 229.295 kb on - strand, within SMc02873at 229.296 kb on + strand, within SMc02873at 229.296 kb on + strand, within SMc02873at 229.296 kb on + strand, within SMc02873at 229.296 kb on + strand, within SMc02873at 229.296 kb on + strand, within SMc02873at 229.297 kb on - strand, within SMc02873at 229.297 kb on - strand, within SMc02873at 229.297 kb on - strand, within SMc02873at 229.297 kb on - strand, within SMc02873at 229.441 kb on - strand, within SMc02873at 229.471 kb on - strand, within SMc02873at 229.575 kb on + strand, within SMc02873at 229.575 kb on + strand, within SMc02873at 229.650 kb on + strand, within SMc02873at 229.650 kb on + strand, within SMc02873at 229.650 kb on + strand, within SMc02873at 229.650 kb on + strand, within SMc02873at 229.650 kb on + strand, within SMc02873at 229.651 kb on - strand, within SMc02873at 229.651 kb on - strand, within SMc02873at 229.651 kb on - strand, within SMc02873at 229.747 kb on - strand, within SMc02873at 229.887 kb on + strand, within SMc02873at 229.972 kb on + strand, within SMc02873at 230.001 kb on - strand, within SMc02873at 230.196 kb on - strandat 230.196 kb on - strandat 230.196 kb on - strandat 230.229 kb on + strandat 230.302 kb on + strandat 230.403 kb on + strand, within SMc02874at 230.404 kb on - strand, within SMc02874at 230.702 kb on - strand, within SMc02874at 230.800 kb on + strand, within SMc02874at 230.868 kb on + strand, within SMc02874at 230.868 kb on + strand, within SMc02874at 230.868 kb on + strand, within SMc02874at 230.869 kb on - strand, within SMc02874at 230.869 kb on - strand, within SMc02874at 230.875 kb on + strand, within SMc02874

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
remove
228,080 + SMc02872 0.40 +0.2
228,105 + SMc02872 0.42 -0.0
228,106 - SMc02872 0.42 -0.5
228,107 + SMc02872 0.43 -0.2
228,107 + SMc02872 0.43 +0.6
228,107 + SMc02872 0.43 +0.9
228,108 - SMc02872 0.43 +0.8
228,108 - SMc02872 0.43 -2.0
228,206 + SMc02872 0.53 -2.1
228,206 + SMc02872 0.53 -0.7
228,207 - SMc02872 0.53 +0.1
228,207 - SMc02872 0.53 +4.2
228,291 + SMc02872 0.62 +0.9
228,302 + SMc02872 0.63 -3.6
228,506 + SMc02872 0.85 -0.7
228,506 + SMc02872 0.85 -0.7
228,506 + SMc02872 0.85 +0.0
228,507 - SMc02872 0.85 -0.4
228,626 + -0.5
228,626 + -0.2
228,626 + -1.8
228,626 + -0.2
228,627 - +1.7
228,627 - -0.7
228,627 - -0.2
228,922 - +2.0
229,040 - -1.6
229,066 - SMc02873 0.12 -1.0
229,185 + SMc02873 0.21 +0.2
229,294 + SMc02873 0.30 +0.8
229,295 - SMc02873 0.30 +0.7
229,295 - SMc02873 0.30 -1.7
229,295 - SMc02873 0.30 -1.8
229,296 + SMc02873 0.30 -1.2
229,296 + SMc02873 0.30 -2.7
229,296 + SMc02873 0.30 -4.0
229,296 + SMc02873 0.30 +0.4
229,296 + SMc02873 0.30 +0.2
229,297 - SMc02873 0.30 -0.8
229,297 - SMc02873 0.30 +1.0
229,297 - SMc02873 0.30 +0.8
229,297 - SMc02873 0.30 -1.8
229,441 - SMc02873 0.41 -0.8
229,471 - SMc02873 0.44 -0.5
229,575 + SMc02873 0.52 -2.2
229,575 + SMc02873 0.52 +0.3
229,650 + SMc02873 0.58 +0.2
229,650 + SMc02873 0.58 -0.9
229,650 + SMc02873 0.58 -0.2
229,650 + SMc02873 0.58 -0.2
229,650 + SMc02873 0.58 +0.5
229,651 - SMc02873 0.58 -0.4
229,651 - SMc02873 0.58 +1.3
229,651 - SMc02873 0.58 -2.5
229,747 - SMc02873 0.66 -0.2
229,887 + SMc02873 0.77 +0.8
229,972 + SMc02873 0.83 -1.4
230,001 - SMc02873 0.86 +0.4
230,196 - +0.2
230,196 - -2.4
230,196 - +1.2
230,229 + -0.5
230,302 + -0.7
230,403 + SMc02874 0.19 -0.9
230,404 - SMc02874 0.19 +0.7
230,702 - SMc02874 0.52 +0.9
230,800 + SMc02874 0.63 -0.3
230,868 + SMc02874 0.71 -0.3
230,868 + SMc02874 0.71 -0.0
230,868 + SMc02874 0.71 -0.5
230,869 - SMc02874 0.71 -0.9
230,869 - SMc02874 0.71 +0.3
230,875 + SMc02874 0.71 -0.1

Or see this region's nucleotide sequence