Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02869 and SMc02870 overlap by 32 nucleotides SMc02870 and SMc02871 overlap by 4 nucleotides SMc02871 and SMc02872 are separated by 12 nucleotides
SMc02869: SMc02869 - N-Acetyl-D-glucosamine ABC transport system, ATPase component <small>(from data)</small>, at 224,764 to 225,822
SMc02869
SMc02870: SMc02870 - oxidoreductase, at 225,791 to 226,855
SMc02870
SMc02871: SMc02871 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 2 <small>(from data)</small>, at 226,852 to 227,691
SMc02871
SMc02872: SMc02872 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 1 <small>(from data)</small>, at 227,704 to 228,651
SMc02872
Position (kb) 225
226
227 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 224.855 kb on + strand at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.913 kb on - strand, within SMc02869 at 225.110 kb on + strand, within SMc02869 at 225.110 kb on + strand, within SMc02869 at 225.111 kb on - strand, within SMc02869 at 225.209 kb on + strand, within SMc02869 at 225.209 kb on + strand, within SMc02869 at 225.209 kb on + strand, within SMc02869 at 225.210 kb on - strand, within SMc02869 at 225.210 kb on - strand, within SMc02869 at 225.210 kb on - strand, within SMc02869 at 225.210 kb on - strand, within SMc02869 at 225.399 kb on - strand, within SMc02869 at 225.515 kb on + strand, within SMc02869 at 225.515 kb on + strand, within SMc02869 at 225.516 kb on - strand, within SMc02869 at 225.524 kb on + strand, within SMc02869 at 225.524 kb on + strand, within SMc02869 at 225.524 kb on + strand, within SMc02869 at 225.595 kb on + strand, within SMc02869 at 225.595 kb on + strand, within SMc02869 at 225.792 kb on + strand at 225.793 kb on - strand at 226.171 kb on - strand, within SMc02870 at 226.216 kb on - strand, within SMc02870 at 226.221 kb on + strand, within SMc02870 at 226.221 kb on + strand, within SMc02870 at 226.222 kb on - strand, within SMc02870 at 226.314 kb on + strand, within SMc02870 at 226.314 kb on + strand, within SMc02870 at 226.315 kb on - strand, within SMc02870 at 226.419 kb on + strand, within SMc02870 at 226.419 kb on + strand, within SMc02870 at 226.420 kb on - strand, within SMc02870 at 226.483 kb on + strand, within SMc02870 at 226.483 kb on + strand, within SMc02870 at 226.632 kb on + strand, within SMc02870 at 226.633 kb on - strand, within SMc02870 at 226.633 kb on - strand, within SMc02870 at 226.779 kb on + strand at 226.804 kb on + strand at 226.805 kb on - strand at 226.907 kb on + strand at 226.907 kb on + strand at 227.219 kb on - strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.247 kb on - strand, within SMc02871 at 227.272 kb on - strand, within SMc02871 at 227.354 kb on + strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.474 kb on + strand, within SMc02871 at 227.631 kb on - strand at 227.631 kb on - strand at 227.696 kb on + strand at 227.697 kb on - strand at 227.697 kb on - strand at 227.705 kb on + strand at 227.706 kb on - strand at 227.706 kb on - strand at 227.734 kb on + strand at 227.735 kb on - strand at 227.748 kb on - strand at 227.748 kb on - strand at 227.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 224,855 + -3.9 224,912 + SMc02869 0.14 +0.3 224,912 + SMc02869 0.14 -1.2 224,912 + SMc02869 0.14 -1.5 224,912 + SMc02869 0.14 +0.4 224,912 + SMc02869 0.14 -0.2 224,913 - SMc02869 0.14 -1.9 225,110 + SMc02869 0.33 +2.0 225,110 + SMc02869 0.33 -0.5 225,111 - SMc02869 0.33 +1.1 225,209 + SMc02869 0.42 +0.0 225,209 + SMc02869 0.42 -0.6 225,209 + SMc02869 0.42 -1.9 225,210 - SMc02869 0.42 -0.6 225,210 - SMc02869 0.42 -1.0 225,210 - SMc02869 0.42 -0.6 225,210 - SMc02869 0.42 -1.1 225,399 - SMc02869 0.60 -0.8 225,515 + SMc02869 0.71 +1.4 225,515 + SMc02869 0.71 -0.0 225,516 - SMc02869 0.71 -1.1 225,524 + SMc02869 0.72 -0.0 225,524 + SMc02869 0.72 +0.3 225,524 + SMc02869 0.72 -0.4 225,595 + SMc02869 0.78 -0.6 225,595 + SMc02869 0.78 +0.2 225,792 + -0.1 225,793 - +0.6 226,171 - SMc02870 0.36 -2.7 226,216 - SMc02870 0.40 +2.7 226,221 + SMc02870 0.40 -0.6 226,221 + SMc02870 0.40 -3.2 226,222 - SMc02870 0.40 -1.0 226,314 + SMc02870 0.49 +0.6 226,314 + SMc02870 0.49 +0.2 226,315 - SMc02870 0.49 -1.9 226,419 + SMc02870 0.59 -1.5 226,419 + SMc02870 0.59 -1.2 226,420 - SMc02870 0.59 -0.9 226,483 + SMc02870 0.65 +0.6 226,483 + SMc02870 0.65 +0.1 226,632 + SMc02870 0.79 +1.0 226,633 - SMc02870 0.79 +0.4 226,633 - SMc02870 0.79 -0.0 226,779 + +1.0 226,804 + -1.2 226,805 - -0.7 226,907 + -0.2 226,907 + -0.1 227,219 - SMc02871 0.44 -0.2 227,246 + SMc02871 0.47 +0.5 227,246 + SMc02871 0.47 -0.5 227,246 + SMc02871 0.47 -0.0 227,247 - SMc02871 0.47 -0.7 227,272 - SMc02871 0.50 +0.4 227,354 + SMc02871 0.60 -2.4 227,355 - SMc02871 0.60 -1.1 227,355 - SMc02871 0.60 +0.8 227,355 - SMc02871 0.60 +2.1 227,474 + SMc02871 0.74 +0.0 227,631 - +0.6 227,631 - -0.1 227,696 + -0.9 227,697 - +0.3 227,697 - +0.7 227,705 + -1.4 227,706 - -0.7 227,706 - -0.5 227,734 + +0.2 227,735 - -0.2 227,748 - -4.3 227,748 - +1.0 227,748 - -2.6
Or see this region's nucleotide sequence