Strain Fitness in Sinorhizobium meliloti 1021 around SMc01650

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01648 and SMc01649 are separated by 140 nucleotidesSMc01649 and SMc01650 are separated by 7 nucleotidesSMc01650 and SMc01651 are separated by 119 nucleotides SMc01648: SMc01648 - hypothetical protein, at 2,444,583 to 2,446,580 SMc01648 SMc01649: SMc01649 - hypothetical protein, at 2,446,721 to 2,447,125 SMc01649 SMc01650: SMc01650 - esterase/lipase, at 2,447,133 to 2,448,056 SMc01650 SMc01651: SMc01651 - transcriptional regulator, at 2,448,176 to 2,449,084 SMc01651 Position (kb) 2447 2448 2449Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2446.215 kb on + strand, within SMc01648at 2446.215 kb on + strand, within SMc01648at 2446.216 kb on - strand, within SMc01648at 2446.217 kb on + strand, within SMc01648at 2446.217 kb on + strand, within SMc01648at 2446.302 kb on - strand, within SMc01648at 2446.669 kb on + strandat 2446.670 kb on - strandat 2446.693 kb on + strandat 2446.875 kb on - strand, within SMc01649at 2446.906 kb on + strand, within SMc01649at 2446.907 kb on - strand, within SMc01649at 2446.907 kb on - strand, within SMc01649at 2446.907 kb on - strand, within SMc01649at 2446.975 kb on + strand, within SMc01649at 2446.976 kb on - strand, within SMc01649at 2446.976 kb on - strand, within SMc01649at 2446.976 kb on - strand, within SMc01649at 2446.976 kb on - strand, within SMc01649at 2447.052 kb on + strand, within SMc01649at 2447.052 kb on + strand, within SMc01649at 2447.053 kb on - strand, within SMc01649at 2447.058 kb on + strand, within SMc01649at 2447.059 kb on - strand, within SMc01649at 2447.059 kb on - strand, within SMc01649at 2447.059 kb on - strand, within SMc01649at 2447.251 kb on + strand, within SMc01650at 2447.252 kb on - strand, within SMc01650at 2447.291 kb on - strand, within SMc01650at 2447.323 kb on + strand, within SMc01650at 2447.338 kb on + strand, within SMc01650at 2447.473 kb on + strand, within SMc01650at 2447.474 kb on - strand, within SMc01650at 2447.474 kb on - strand, within SMc01650at 2447.474 kb on - strand, within SMc01650at 2447.474 kb on - strand, within SMc01650at 2447.474 kb on - strand, within SMc01650at 2447.509 kb on + strand, within SMc01650at 2447.509 kb on + strand, within SMc01650at 2447.563 kb on - strand, within SMc01650at 2447.595 kb on - strand, within SMc01650at 2447.798 kb on + strand, within SMc01650at 2447.799 kb on - strand, within SMc01650at 2447.799 kb on - strand, within SMc01650at 2447.800 kb on + strand, within SMc01650at 2447.800 kb on + strand, within SMc01650at 2447.842 kb on + strand, within SMc01650at 2447.932 kb on + strand, within SMc01650at 2447.933 kb on - strand, within SMc01650at 2447.933 kb on - strand, within SMc01650at 2447.933 kb on - strand, within SMc01650at 2447.933 kb on - strand, within SMc01650at 2447.933 kb on - strand, within SMc01650at 2447.980 kb on + strandat 2447.980 kb on + strandat 2448.080 kb on - strandat 2448.166 kb on + strandat 2448.204 kb on - strandat 2448.793 kb on + strand, within SMc01651at 2448.793 kb on + strand, within SMc01651

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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2,446,215 + SMc01648 0.82 +0.9
2,446,215 + SMc01648 0.82 -0.3
2,446,216 - SMc01648 0.82 -1.5
2,446,217 + SMc01648 0.82 -1.1
2,446,217 + SMc01648 0.82 +3.9
2,446,302 - SMc01648 0.86 +0.6
2,446,669 + -1.5
2,446,670 - +0.9
2,446,693 + +0.1
2,446,875 - SMc01649 0.38 -1.5
2,446,906 + SMc01649 0.46 -0.0
2,446,907 - SMc01649 0.46 -1.2
2,446,907 - SMc01649 0.46 -0.1
2,446,907 - SMc01649 0.46 +1.1
2,446,975 + SMc01649 0.63 -0.4
2,446,976 - SMc01649 0.63 -0.7
2,446,976 - SMc01649 0.63 +2.6
2,446,976 - SMc01649 0.63 -0.3
2,446,976 - SMc01649 0.63 +0.1
2,447,052 + SMc01649 0.82 +1.3
2,447,052 + SMc01649 0.82 +0.3
2,447,053 - SMc01649 0.82 +0.8
2,447,058 + SMc01649 0.83 +0.3
2,447,059 - SMc01649 0.83 -0.4
2,447,059 - SMc01649 0.83 -0.3
2,447,059 - SMc01649 0.83 -0.3
2,447,251 + SMc01650 0.13 -0.5
2,447,252 - SMc01650 0.13 +0.4
2,447,291 - SMc01650 0.17 -2.2
2,447,323 + SMc01650 0.21 +1.0
2,447,338 + SMc01650 0.22 -0.7
2,447,473 + SMc01650 0.37 -0.9
2,447,474 - SMc01650 0.37 +0.9
2,447,474 - SMc01650 0.37 -0.5
2,447,474 - SMc01650 0.37 +0.2
2,447,474 - SMc01650 0.37 -0.2
2,447,474 - SMc01650 0.37 +0.1
2,447,509 + SMc01650 0.41 -0.3
2,447,509 + SMc01650 0.41 +1.0
2,447,563 - SMc01650 0.47 +0.4
2,447,595 - SMc01650 0.50 -1.9
2,447,798 + SMc01650 0.72 +0.1
2,447,799 - SMc01650 0.72 +1.8
2,447,799 - SMc01650 0.72 -0.1
2,447,800 + SMc01650 0.72 +0.8
2,447,800 + SMc01650 0.72 -0.1
2,447,842 + SMc01650 0.77 +0.1
2,447,932 + SMc01650 0.86 +0.7
2,447,933 - SMc01650 0.87 +0.4
2,447,933 - SMc01650 0.87 +0.6
2,447,933 - SMc01650 0.87 +1.5
2,447,933 - SMc01650 0.87 +0.3
2,447,933 - SMc01650 0.87 +0.6
2,447,980 + +0.2
2,447,980 + +0.8
2,448,080 - +0.4
2,448,166 + +0.0
2,448,204 - -2.1
2,448,793 + SMc01651 0.68 +0.4
2,448,793 + SMc01651 0.68 +0.1

Or see this region's nucleotide sequence