Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00965 and SMc00964 are separated by 4 nucleotides SMc00964 and SMc00963 are separated by 31 nucleotides SMc00963 and SMc00962 overlap by 7 nucleotides
SMc00965: SMc00965 - hypothetical protein, at 974,919 to 976,415
SMc00965
SMc00964: SMc00964 - hypothetical protein, at 976,420 to 976,983
SMc00964
SMc00963: SMc00963 - hypothetical protein, at 977,015 to 977,620
SMc00963
SMc00962: SMc00962 - ABC transporter ATP-binding protein, at 977,614 to 978,294
SMc00962
Position (kb) 976
977 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 975.538 kb on + strand, within SMc00965 at 975.620 kb on + strand, within SMc00965 at 975.621 kb on - strand, within SMc00965 at 975.621 kb on - strand, within SMc00965 at 975.802 kb on + strand, within SMc00965 at 975.803 kb on - strand, within SMc00965 at 976.122 kb on + strand, within SMc00965 at 976.983 kb on + strand at 976.983 kb on + strand at 976.983 kb on + strand at 976.983 kb on + strand at 976.984 kb on - strand at 976.984 kb on - strand at 976.985 kb on + strand at 976.985 kb on + strand at 976.985 kb on + strand at 976.986 kb on - strand at 976.986 kb on - strand at 976.986 kb on - strand at 976.986 kb on - strand at 976.992 kb on - strand at 976.992 kb on - strand at 976.992 kb on - strand at 977.001 kb on + strand at 977.002 kb on - strand at 977.017 kb on - strand at 977.158 kb on - strand, within SMc00963 at 977.265 kb on - strand, within SMc00963 at 977.402 kb on + strand, within SMc00963 at 977.403 kb on - strand, within SMc00963 at 977.466 kb on + strand, within SMc00963 at 977.604 kb on + strand at 977.605 kb on - strand at 977.605 kb on - strand at 977.605 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 975,538 + SMc00965 0.41 -0.1 975,620 + SMc00965 0.47 +1.7 975,621 - SMc00965 0.47 +0.7 975,621 - SMc00965 0.47 +0.4 975,802 + SMc00965 0.59 -1.3 975,803 - SMc00965 0.59 +0.7 976,122 + SMc00965 0.80 -0.6 976,983 + -1.8 976,983 + -2.4 976,983 + -1.3 976,983 + -1.7 976,984 - -1.9 976,984 - +0.1 976,985 + -0.1 976,985 + -2.4 976,985 + -4.2 976,986 - +0.3 976,986 - +1.2 976,986 - -0.8 976,986 - -0.1 976,992 - -0.8 976,992 - -2.1 976,992 - +0.6 977,001 + -0.5 977,002 - -0.3 977,017 - -1.1 977,158 - SMc00963 0.24 -4.8 977,265 - SMc00963 0.41 -3.9 977,402 + SMc00963 0.64 -2.5 977,403 - SMc00963 0.64 -1.7 977,466 + SMc00963 0.74 -3.5 977,604 + -3.4 977,605 - +0.1 977,605 - -0.2 977,605 - +0.1
Or see this region's nucleotide sequence