Strain Fitness in Sinorhizobium meliloti 1021 around SMc00555

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00554 and SMc00555 are separated by 146 nucleotidesSMc00555 and SMc00556 are separated by 68 nucleotides SMc00554: SMc00554 - amidophosphoribosyltransferase, at 1,223,663 to 1,225,153 SMc00554 SMc00555: SMc00555 - colicin V production transmembrane protein, at 1,225,300 to 1,225,899 SMc00555 SMc00556: SMc00556 - DNA repair protein RadA, at 1,225,968 to 1,227,431 SMc00556 Position (kb) 1225 1226Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1224.309 kb on + strand, within SMc00554at 1224.310 kb on - strand, within SMc00554at 1224.351 kb on + strand, within SMc00554at 1224.351 kb on + strand, within SMc00554at 1224.357 kb on + strand, within SMc00554at 1224.358 kb on - strand, within SMc00554at 1224.875 kb on + strand, within SMc00554at 1224.875 kb on + strand, within SMc00554at 1224.875 kb on + strand, within SMc00554at 1224.875 kb on + strand, within SMc00554at 1224.875 kb on + strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.876 kb on - strand, within SMc00554at 1224.930 kb on + strand, within SMc00554at 1224.966 kb on + strand, within SMc00554at 1225.277 kb on + strandat 1225.384 kb on - strand, within SMc00555at 1225.962 kb on - strandat 1226.308 kb on + strand, within SMc00556at 1226.659 kb on + strand, within SMc00556

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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1,224,309 + SMc00554 0.43 -1.1
1,224,310 - SMc00554 0.43 -2.2
1,224,351 + SMc00554 0.46 -3.6
1,224,351 + SMc00554 0.46 -3.8
1,224,357 + SMc00554 0.47 -1.6
1,224,358 - SMc00554 0.47 -2.9
1,224,875 + SMc00554 0.81 -3.2
1,224,875 + SMc00554 0.81 -3.8
1,224,875 + SMc00554 0.81 -3.8
1,224,875 + SMc00554 0.81 -3.4
1,224,875 + SMc00554 0.81 -1.9
1,224,876 - SMc00554 0.81 -4.2
1,224,876 - SMc00554 0.81 -1.9
1,224,876 - SMc00554 0.81 -4.8
1,224,876 - SMc00554 0.81 -5.7
1,224,876 - SMc00554 0.81 -4.3
1,224,876 - SMc00554 0.81 -3.1
1,224,930 + SMc00554 0.85 -5.2
1,224,966 + SMc00554 0.87 -2.3
1,225,277 + -1.4
1,225,384 - SMc00555 0.14 -2.0
1,225,962 - -0.9
1,226,308 + SMc00556 0.23 -1.4
1,226,659 + SMc00556 0.47 -1.3

Or see this region's nucleotide sequence