Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00399 and SMc00400 are separated by 219 nucleotides SMc00400 and SMc00401 overlap by 1 nucleotides
SMc00399: SMc00399 - magnesium/cobalt transporter CorA, at 348,723 to 349,712
SMc00399
SMc00400: SMc00400 - signal peptide protein, at 349,932 to 351,059
SMc00400
SMc00401: SMc00401 - hypothetical protein, at 351,059 to 352,609
SMc00401
Position (kb) 349
350
351
352 Strain fitness (log2 ratio) -2
-1
0
1
2 at 349.087 kb on + strand, within SMc00399 at 349.699 kb on + strand at 349.699 kb on + strand at 350.254 kb on + strand, within SMc00400 at 350.254 kb on + strand, within SMc00400 at 350.515 kb on + strand, within SMc00400 at 350.516 kb on - strand, within SMc00400 at 350.516 kb on - strand, within SMc00400 at 350.570 kb on - strand, within SMc00400 at 350.570 kb on - strand, within SMc00400 at 350.707 kb on + strand, within SMc00400 at 351.016 kb on - strand at 351.159 kb on - strand at 351.649 kb on + strand, within SMc00401 at 351.927 kb on + strand, within SMc00401 at 351.928 kb on - strand, within SMc00401 at 351.986 kb on - strand, within SMc00401 at 351.986 kb on - strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.987 kb on + strand, within SMc00401 at 351.988 kb on - strand, within SMc00401 at 351.988 kb on - strand, within SMc00401 at 351.988 kb on - strand, within SMc00401 at 352.053 kb on + strand, within SMc00401 at 352.053 kb on + strand, within SMc00401 at 352.054 kb on - strand, within SMc00401
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 349,087 + SMc00399 0.37 +0.4 349,699 + -2.5 349,699 + +1.0 350,254 + SMc00400 0.29 -1.1 350,254 + SMc00400 0.29 +1.2 350,515 + SMc00400 0.52 +1.7 350,516 - SMc00400 0.52 +1.3 350,516 - SMc00400 0.52 +2.5 350,570 - SMc00400 0.57 +0.4 350,570 - SMc00400 0.57 +0.3 350,707 + SMc00400 0.69 -0.3 351,016 - -0.3 351,159 - +0.2 351,649 + SMc00401 0.38 +1.3 351,927 + SMc00401 0.56 -0.4 351,928 - SMc00401 0.56 -0.0 351,986 - SMc00401 0.60 +0.0 351,986 - SMc00401 0.60 -0.0 351,987 + SMc00401 0.60 -2.5 351,987 + SMc00401 0.60 -0.3 351,987 + SMc00401 0.60 +0.1 351,987 + SMc00401 0.60 -0.6 351,987 + SMc00401 0.60 -2.4 351,988 - SMc00401 0.60 -0.6 351,988 - SMc00401 0.60 +0.0 351,988 - SMc00401 0.60 -2.2 352,053 + SMc00401 0.64 +0.6 352,053 + SMc00401 0.64 +1.1 352,054 - SMc00401 0.64 +0.6
Or see this region's nucleotide sequence