Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00262 and SMc00263 overlap by 4 nucleotides SMc00263 and SMc00264 are separated by 3 nucleotides SMc00264 and SMc00265 are separated by 102 nucleotides
SMc00262: SMc00262 - acetyl-CoA acetyltransferase, at 1,830,433 to 1,831,602
SMc00262
SMc00263: SMc00263 - transcriptional regulator, at 1,831,599 to 1,832,447
SMc00263
SMc00264: SMc00264 - oxidoreductase, at 1,832,451 to 1,833,254
SMc00264
SMc00265: SMc00265 - periplasmic binding protein, at 1,833,357 to 1,834,367
SMc00265
Position (kb)
1832
1833
1834 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1831.582 kb on + strand at 1831.583 kb on - strand at 1831.583 kb on - strand at 1831.641 kb on + strand at 1831.641 kb on + strand at 1831.641 kb on + strand at 1831.641 kb on + strand at 1831.642 kb on - strand at 1831.642 kb on - strand at 1831.642 kb on - strand at 1831.642 kb on - strand at 1831.642 kb on - strand at 1831.842 kb on - strand, within SMc00263 at 1832.218 kb on + strand, within SMc00263 at 1832.218 kb on + strand, within SMc00263 at 1832.219 kb on - strand, within SMc00263 at 1832.235 kb on - strand, within SMc00263 at 1832.236 kb on + strand, within SMc00263 at 1832.236 kb on + strand, within SMc00263 at 1832.237 kb on - strand, within SMc00263 at 1832.237 kb on - strand, within SMc00263 at 1832.237 kb on - strand, within SMc00263 at 1832.237 kb on - strand, within SMc00263 at 1832.240 kb on - strand, within SMc00263 at 1832.309 kb on + strand, within SMc00263 at 1832.457 kb on + strand at 1832.457 kb on + strand at 1832.458 kb on - strand at 1832.633 kb on - strand, within SMc00264 at 1832.653 kb on + strand, within SMc00264 at 1832.653 kb on + strand, within SMc00264 at 1832.716 kb on + strand, within SMc00264 at 1832.717 kb on - strand, within SMc00264 at 1832.768 kb on - strand, within SMc00264 at 1832.768 kb on - strand, within SMc00264 at 1832.780 kb on - strand, within SMc00264 at 1833.160 kb on + strand, within SMc00264 at 1833.161 kb on - strand, within SMc00264 at 1833.161 kb on - strand, within SMc00264 at 1833.597 kb on + strand, within SMc00265 at 1833.597 kb on + strand, within SMc00265 at 1833.598 kb on - strand, within SMc00265 at 1833.598 kb on - strand, within SMc00265 at 1833.598 kb on - strand, within SMc00265 at 1833.598 kb on - strand, within SMc00265 at 1833.598 kb on - strand, within SMc00265 at 1833.659 kb on + strand, within SMc00265 at 1833.659 kb on + strand, within SMc00265 at 1833.660 kb on - strand, within SMc00265 at 1833.660 kb on - strand, within SMc00265 at 1833.660 kb on - strand, within SMc00265 at 1833.660 kb on - strand, within SMc00265 at 1833.660 kb on - strand, within SMc00265 at 1833.694 kb on + strand, within SMc00265 at 1833.694 kb on + strand, within SMc00265 at 1833.695 kb on - strand, within SMc00265 at 1833.695 kb on - strand, within SMc00265 at 1833.695 kb on - strand, within SMc00265 at 1833.695 kb on - strand, within SMc00265 at 1833.695 kb on - strand, within SMc00265 at 1834.019 kb on - strand, within SMc00265 at 1834.019 kb on - strand, within SMc00265
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 1,831,582 + -0.7 1,831,583 - -3.9 1,831,583 - -0.2 1,831,641 + -1.1 1,831,641 + -0.5 1,831,641 + -0.4 1,831,641 + -0.5 1,831,642 - +1.8 1,831,642 - +0.3 1,831,642 - +0.6 1,831,642 - +3.5 1,831,642 - -0.5 1,831,842 - SMc00263 0.29 -0.8 1,832,218 + SMc00263 0.73 +0.5 1,832,218 + SMc00263 0.73 +0.3 1,832,219 - SMc00263 0.73 +2.1 1,832,235 - SMc00263 0.75 +2.0 1,832,236 + SMc00263 0.75 -2.9 1,832,236 + SMc00263 0.75 -0.4 1,832,237 - SMc00263 0.75 -0.3 1,832,237 - SMc00263 0.75 +0.4 1,832,237 - SMc00263 0.75 -0.0 1,832,237 - SMc00263 0.75 +0.5 1,832,240 - SMc00263 0.76 +0.3 1,832,309 + SMc00263 0.84 +0.3 1,832,457 + +1.0 1,832,457 + +1.2 1,832,458 - -2.2 1,832,633 - SMc00264 0.23 -2.8 1,832,653 + SMc00264 0.25 +2.8 1,832,653 + SMc00264 0.25 +0.5 1,832,716 + SMc00264 0.33 -0.4 1,832,717 - SMc00264 0.33 -1.3 1,832,768 - SMc00264 0.39 -0.8 1,832,768 - SMc00264 0.39 +0.2 1,832,780 - SMc00264 0.41 +1.2 1,833,160 + SMc00264 0.88 -1.8 1,833,161 - SMc00264 0.88 -1.6 1,833,161 - SMc00264 0.88 -1.4 1,833,597 + SMc00265 0.24 +1.3 1,833,597 + SMc00265 0.24 -0.6 1,833,598 - SMc00265 0.24 +0.0 1,833,598 - SMc00265 0.24 -0.1 1,833,598 - SMc00265 0.24 -0.1 1,833,598 - SMc00265 0.24 -1.2 1,833,598 - SMc00265 0.24 -0.0 1,833,659 + SMc00265 0.30 -0.7 1,833,659 + SMc00265 0.30 +0.1 1,833,660 - SMc00265 0.30 +0.3 1,833,660 - SMc00265 0.30 -0.4 1,833,660 - SMc00265 0.30 -1.6 1,833,660 - SMc00265 0.30 +0.6 1,833,660 - SMc00265 0.30 -1.1 1,833,694 + SMc00265 0.33 +0.3 1,833,694 + SMc00265 0.33 -3.5 1,833,695 - SMc00265 0.33 +0.6 1,833,695 - SMc00265 0.33 +0.9 1,833,695 - SMc00265 0.33 +0.5 1,833,695 - SMc00265 0.33 -1.0 1,833,695 - SMc00265 0.33 +0.2 1,834,019 - SMc00265 0.65 +0.6 1,834,019 - SMc00265 0.65 -0.7
Or see this region's nucleotide sequence