Strain Fitness in Sinorhizobium meliloti 1021 around SMc00263

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00262 and SMc00263 overlap by 4 nucleotidesSMc00263 and SMc00264 are separated by 3 nucleotidesSMc00264 and SMc00265 are separated by 102 nucleotides SMc00262: SMc00262 - acetyl-CoA acetyltransferase, at 1,830,433 to 1,831,602 SMc00262 SMc00263: SMc00263 - transcriptional regulator, at 1,831,599 to 1,832,447 SMc00263 SMc00264: SMc00264 - oxidoreductase, at 1,832,451 to 1,833,254 SMc00264 SMc00265: SMc00265 - periplasmic binding protein, at 1,833,357 to 1,834,367 SMc00265 Position (kb) 1831 1832 1833Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1830.677 kb on + strand, within SMc00262at 1830.678 kb on - strand, within SMc00262at 1830.713 kb on + strand, within SMc00262at 1830.730 kb on + strand, within SMc00262at 1830.731 kb on - strand, within SMc00262at 1830.958 kb on + strand, within SMc00262at 1830.958 kb on + strand, within SMc00262at 1831.053 kb on + strand, within SMc00262at 1831.073 kb on - strand, within SMc00262at 1831.142 kb on + strand, within SMc00262at 1831.142 kb on + strand, within SMc00262at 1831.142 kb on + strand, within SMc00262at 1831.142 kb on + strand, within SMc00262at 1831.142 kb on + strand, within SMc00262at 1831.142 kb on + strand, within SMc00262at 1831.142 kb on + strand, within SMc00262at 1831.143 kb on - strand, within SMc00262at 1831.143 kb on - strand, within SMc00262at 1831.143 kb on - strand, within SMc00262at 1831.143 kb on - strand, within SMc00262at 1831.143 kb on - strand, within SMc00262at 1831.209 kb on - strand, within SMc00262at 1831.209 kb on - strand, within SMc00262at 1831.323 kb on + strand, within SMc00262at 1831.324 kb on - strand, within SMc00262at 1831.325 kb on + strand, within SMc00262at 1831.325 kb on + strand, within SMc00262at 1831.326 kb on - strand, within SMc00262at 1831.582 kb on + strandat 1831.583 kb on - strandat 1831.583 kb on - strandat 1831.641 kb on + strandat 1831.641 kb on + strandat 1831.641 kb on + strandat 1831.641 kb on + strandat 1831.642 kb on - strandat 1831.642 kb on - strandat 1831.642 kb on - strandat 1831.642 kb on - strandat 1831.642 kb on - strandat 1831.842 kb on - strand, within SMc00263at 1832.218 kb on + strand, within SMc00263at 1832.218 kb on + strand, within SMc00263at 1832.219 kb on - strand, within SMc00263at 1832.235 kb on - strand, within SMc00263at 1832.236 kb on + strand, within SMc00263at 1832.236 kb on + strand, within SMc00263at 1832.237 kb on - strand, within SMc00263at 1832.237 kb on - strand, within SMc00263at 1832.237 kb on - strand, within SMc00263at 1832.237 kb on - strand, within SMc00263at 1832.240 kb on - strand, within SMc00263at 1832.309 kb on + strand, within SMc00263at 1832.457 kb on + strandat 1832.457 kb on + strandat 1832.458 kb on - strandat 1832.633 kb on - strand, within SMc00264at 1832.653 kb on + strand, within SMc00264at 1832.653 kb on + strand, within SMc00264at 1832.716 kb on + strand, within SMc00264at 1832.717 kb on - strand, within SMc00264at 1832.768 kb on - strand, within SMc00264at 1832.768 kb on - strand, within SMc00264at 1832.780 kb on - strand, within SMc00264at 1833.160 kb on + strand, within SMc00264at 1833.161 kb on - strand, within SMc00264at 1833.161 kb on - strand, within SMc00264

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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1,830,677 + SMc00262 0.21 -0.6
1,830,678 - SMc00262 0.21 -0.4
1,830,713 + SMc00262 0.24 +0.2
1,830,730 + SMc00262 0.25 +0.0
1,830,731 - SMc00262 0.25 +0.9
1,830,958 + SMc00262 0.45 -0.0
1,830,958 + SMc00262 0.45 +0.3
1,831,053 + SMc00262 0.53 -1.3
1,831,073 - SMc00262 0.55 +0.2
1,831,142 + SMc00262 0.61 -0.6
1,831,142 + SMc00262 0.61 +2.3
1,831,142 + SMc00262 0.61 -0.1
1,831,142 + SMc00262 0.61 -1.0
1,831,142 + SMc00262 0.61 -1.2
1,831,142 + SMc00262 0.61 -2.8
1,831,142 + SMc00262 0.61 -0.1
1,831,143 - SMc00262 0.61 -1.2
1,831,143 - SMc00262 0.61 -0.4
1,831,143 - SMc00262 0.61 +1.5
1,831,143 - SMc00262 0.61 -1.7
1,831,143 - SMc00262 0.61 -2.9
1,831,209 - SMc00262 0.66 -2.6
1,831,209 - SMc00262 0.66 -0.2
1,831,323 + SMc00262 0.76 +0.2
1,831,324 - SMc00262 0.76 +2.5
1,831,325 + SMc00262 0.76 -0.4
1,831,325 + SMc00262 0.76 +0.6
1,831,326 - SMc00262 0.76 +0.8
1,831,582 + -0.7
1,831,583 - -3.9
1,831,583 - -0.2
1,831,641 + -1.1
1,831,641 + -0.5
1,831,641 + -0.4
1,831,641 + -0.5
1,831,642 - +1.8
1,831,642 - +0.3
1,831,642 - +0.6
1,831,642 - +3.5
1,831,642 - -0.5
1,831,842 - SMc00263 0.29 -0.8
1,832,218 + SMc00263 0.73 +0.5
1,832,218 + SMc00263 0.73 +0.3
1,832,219 - SMc00263 0.73 +2.1
1,832,235 - SMc00263 0.75 +2.0
1,832,236 + SMc00263 0.75 -2.9
1,832,236 + SMc00263 0.75 -0.4
1,832,237 - SMc00263 0.75 -0.3
1,832,237 - SMc00263 0.75 +0.4
1,832,237 - SMc00263 0.75 -0.0
1,832,237 - SMc00263 0.75 +0.5
1,832,240 - SMc00263 0.76 +0.3
1,832,309 + SMc00263 0.84 +0.3
1,832,457 + +1.0
1,832,457 + +1.2
1,832,458 - -2.2
1,832,633 - SMc00264 0.23 -2.8
1,832,653 + SMc00264 0.25 +2.8
1,832,653 + SMc00264 0.25 +0.5
1,832,716 + SMc00264 0.33 -0.4
1,832,717 - SMc00264 0.33 -1.3
1,832,768 - SMc00264 0.39 -0.8
1,832,768 - SMc00264 0.39 +0.2
1,832,780 - SMc00264 0.41 +1.2
1,833,160 + SMc00264 0.88 -1.8
1,833,161 - SMc00264 0.88 -1.6
1,833,161 - SMc00264 0.88 -1.4

Or see this region's nucleotide sequence