Strain Fitness in Sinorhizobium meliloti 1021 around SMa1890

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1885 and SMa1887 are separated by 65 nucleotidesSMa1887 and SMa1890 are separated by 96 nucleotidesSMa1890 and SMa1891 overlap by 83 nucleotidesSMa1891 and SMa1893 are separated by 78 nucleotides SMa1885: SMa1885 - membrane efflux protein, at 1,073,045 to 1,074,193 SMa1885 SMa1887: SMa1887 - transcriptional regulator, at 1,074,259 to 1,074,861 SMa1887 SMa1890: SMa1890 - oxidoreductase, at 1,074,958 to 1,075,602 SMa1890 SMa1891: SMa1891 - thioredoxin reductase, at 1,075,520 to 1,075,816 SMa1891 SMa1893: SMa1893 - LysR family transcriptional regulator, at 1,075,895 to 1,076,770 SMa1893 Position (kb) 1074 1075 1076Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1073.977 kb on + strand, within SMa1885at 1073.978 kb on - strand, within SMa1885at 1073.978 kb on - strand, within SMa1885at 1074.030 kb on - strand, within SMa1885at 1074.030 kb on - strand, within SMa1885at 1075.177 kb on + strand, within SMa1890at 1075.177 kb on + strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.247 kb on + strand, within SMa1890at 1075.389 kb on - strand, within SMa1890at 1075.389 kb on - strand, within SMa1890at 1075.916 kb on + strandat 1076.040 kb on - strand, within SMa1893at 1076.168 kb on - strand, within SMa1893at 1076.275 kb on - strand, within SMa1893at 1076.315 kb on + strand, within SMa1893at 1076.315 kb on + strand, within SMa1893at 1076.316 kb on - strand, within SMa1893at 1076.316 kb on - strand, within SMa1893at 1076.326 kb on + strand, within SMa1893at 1076.327 kb on - strand, within SMa1893at 1076.327 kb on - strand, within SMa1893at 1076.327 kb on - strand, within SMa1893at 1076.463 kb on - strand, within SMa1893at 1076.469 kb on - strand, within SMa1893

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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1,073,977 + SMa1885 0.81 -3.2
1,073,978 - SMa1885 0.81 -0.8
1,073,978 - SMa1885 0.81 +1.1
1,074,030 - SMa1885 0.86 -1.5
1,074,030 - SMa1885 0.86 -0.0
1,075,177 + SMa1890 0.34 +0.2
1,075,177 + SMa1890 0.34 +2.4
1,075,178 - SMa1890 0.34 -2.6
1,075,178 - SMa1890 0.34 +0.2
1,075,178 - SMa1890 0.34 -0.2
1,075,178 - SMa1890 0.34 +2.0
1,075,178 - SMa1890 0.34 +1.0
1,075,178 - SMa1890 0.34 +0.6
1,075,178 - SMa1890 0.34 +1.1
1,075,178 - SMa1890 0.34 +2.3
1,075,247 + SMa1890 0.45 +2.8
1,075,389 - SMa1890 0.67 -0.5
1,075,389 - SMa1890 0.67 +0.2
1,075,916 + -0.6
1,076,040 - SMa1893 0.17 -1.3
1,076,168 - SMa1893 0.31 -0.6
1,076,275 - SMa1893 0.43 +0.6
1,076,315 + SMa1893 0.48 +1.2
1,076,315 + SMa1893 0.48 +0.2
1,076,316 - SMa1893 0.48 +0.1
1,076,316 - SMa1893 0.48 -1.8
1,076,326 + SMa1893 0.49 -0.0
1,076,327 - SMa1893 0.49 +1.8
1,076,327 - SMa1893 0.49 +0.1
1,076,327 - SMa1893 0.49 -0.2
1,076,463 - SMa1893 0.65 -0.0
1,076,469 - SMa1893 0.66 +0.6

Or see this region's nucleotide sequence