Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1885 and SMa1887 are separated by 65 nucleotides SMa1887 and SMa1890 are separated by 96 nucleotides SMa1890 and SMa1891 overlap by 83 nucleotides SMa1891 and SMa1893 are separated by 78 nucleotides
SMa1885: SMa1885 - membrane efflux protein, at 1,073,045 to 1,074,193
SMa1885
SMa1887: SMa1887 - transcriptional regulator, at 1,074,259 to 1,074,861
SMa1887
SMa1890: SMa1890 - oxidoreductase, at 1,074,958 to 1,075,602
SMa1890
SMa1891: SMa1891 - thioredoxin reductase, at 1,075,520 to 1,075,816
SMa1891
SMa1893: SMa1893 - LysR family transcriptional regulator, at 1,075,895 to 1,076,770
SMa1893
Position (kb)
1074
1075
1076 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1073.977 kb on + strand, within SMa1885 at 1073.978 kb on - strand, within SMa1885 at 1073.978 kb on - strand, within SMa1885 at 1074.030 kb on - strand, within SMa1885 at 1074.030 kb on - strand, within SMa1885 at 1075.177 kb on + strand, within SMa1890 at 1075.177 kb on + strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.247 kb on + strand, within SMa1890 at 1075.389 kb on - strand, within SMa1890 at 1075.389 kb on - strand, within SMa1890 at 1075.916 kb on + strand at 1076.040 kb on - strand, within SMa1893 at 1076.168 kb on - strand, within SMa1893 at 1076.275 kb on - strand, within SMa1893 at 1076.315 kb on + strand, within SMa1893 at 1076.315 kb on + strand, within SMa1893 at 1076.316 kb on - strand, within SMa1893 at 1076.316 kb on - strand, within SMa1893 at 1076.326 kb on + strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.463 kb on - strand, within SMa1893 at 1076.469 kb on - strand, within SMa1893
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 1,073,977 + SMa1885 0.81 -3.2 1,073,978 - SMa1885 0.81 -0.8 1,073,978 - SMa1885 0.81 +1.1 1,074,030 - SMa1885 0.86 -1.5 1,074,030 - SMa1885 0.86 -0.0 1,075,177 + SMa1890 0.34 +0.2 1,075,177 + SMa1890 0.34 +2.4 1,075,178 - SMa1890 0.34 -2.6 1,075,178 - SMa1890 0.34 +0.2 1,075,178 - SMa1890 0.34 -0.2 1,075,178 - SMa1890 0.34 +2.0 1,075,178 - SMa1890 0.34 +1.0 1,075,178 - SMa1890 0.34 +0.6 1,075,178 - SMa1890 0.34 +1.1 1,075,178 - SMa1890 0.34 +2.3 1,075,247 + SMa1890 0.45 +2.8 1,075,389 - SMa1890 0.67 -0.5 1,075,389 - SMa1890 0.67 +0.2 1,075,916 + -0.6 1,076,040 - SMa1893 0.17 -1.3 1,076,168 - SMa1893 0.31 -0.6 1,076,275 - SMa1893 0.43 +0.6 1,076,315 + SMa1893 0.48 +1.2 1,076,315 + SMa1893 0.48 +0.2 1,076,316 - SMa1893 0.48 +0.1 1,076,316 - SMa1893 0.48 -1.8 1,076,326 + SMa1893 0.49 -0.0 1,076,327 - SMa1893 0.49 +1.8 1,076,327 - SMa1893 0.49 +0.1 1,076,327 - SMa1893 0.49 -0.2 1,076,463 - SMa1893 0.65 -0.0 1,076,469 - SMa1893 0.66 +0.6
Or see this region's nucleotide sequence