Strain Fitness in Sinorhizobium meliloti 1021 around SMa1747

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1746 and SMa1747 are separated by 292 nucleotidesSMa1747 and SMa1749 are separated by 39 nucleotides SMa1746: SMa1746 - ABC transporter substrate-binding protein, at 987,982 to 988,983 SMa1746 SMa1747: SMa1747 - TonB-dependent siderophore receptor, at 989,276 to 991,420 SMa1747 SMa1749: SMa1749 - transcriptional regulator, at 991,460 to 992,359 SMa1749 Position (kb) 989 990 991 992Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 988.284 kb on + strand, within SMa1746at 988.285 kb on - strand, within SMa1746at 988.285 kb on - strandat 988.447 kb on + strand, within SMa1746at 988.447 kb on + strand, within SMa1746at 988.450 kb on - strand, within SMa1746at 988.574 kb on + strand, within SMa1746at 988.574 kb on + strand, within SMa1746at 988.598 kb on + strand, within SMa1746at 988.886 kb on + strandat 988.893 kb on + strandat 988.942 kb on + strandat 988.942 kb on + strandat 988.943 kb on - strandat 989.027 kb on - strandat 989.107 kb on + strandat 989.108 kb on - strandat 989.108 kb on - strandat 989.262 kb on - strandat 989.262 kb on - strandat 989.320 kb on - strandat 989.373 kb on + strandat 989.476 kb on + strandat 989.477 kb on - strandat 989.626 kb on - strand, within SMa1747at 989.626 kb on - strand, within SMa1747at 989.702 kb on - strand, within SMa1747at 989.708 kb on + strand, within SMa1747at 989.710 kb on + strand, within SMa1747at 989.710 kb on + strand, within SMa1747at 989.710 kb on + strand, within SMa1747at 989.710 kb on + strand, within SMa1747at 989.710 kb on + strand, within SMa1747at 989.711 kb on - strand, within SMa1747at 989.711 kb on - strand, within SMa1747at 989.714 kb on + strand, within SMa1747at 989.714 kb on + strand, within SMa1747at 989.769 kb on - strand, within SMa1747at 989.769 kb on - strand, within SMa1747at 989.849 kb on + strand, within SMa1747at 989.850 kb on - strand, within SMa1747at 989.891 kb on + strand, within SMa1747at 989.891 kb on + strand, within SMa1747at 989.892 kb on - strand, within SMa1747at 989.918 kb on - strand, within SMa1747at 989.918 kb on - strand, within SMa1747at 989.967 kb on + strand, within SMa1747at 989.968 kb on - strand, within SMa1747at 989.968 kb on - strand, within SMa1747at 989.968 kb on - strand, within SMa1747at 990.011 kb on + strand, within SMa1747at 990.011 kb on + strand, within SMa1747at 990.012 kb on - strand, within SMa1747at 990.018 kb on - strand, within SMa1747at 990.091 kb on + strand, within SMa1747at 990.092 kb on - strand, within SMa1747at 990.188 kb on + strand, within SMa1747at 990.191 kb on + strand, within SMa1747at 990.192 kb on - strand, within SMa1747at 990.218 kb on + strand, within SMa1747at 990.219 kb on - strand, within SMa1747at 990.219 kb on - strand, within SMa1747at 990.311 kb on + strand, within SMa1747at 990.311 kb on + strand, within SMa1747at 990.312 kb on - strand, within SMa1747at 990.312 kb on - strand, within SMa1747at 990.312 kb on - strand, within SMa1747at 990.312 kb on - strand, within SMa1747at 990.312 kb on - strand, within SMa1747at 990.356 kb on + strand, within SMa1747at 990.356 kb on + strand, within SMa1747at 990.357 kb on - strand, within SMa1747at 990.414 kb on - strand, within SMa1747at 990.497 kb on + strand, within SMa1747at 990.536 kb on + strand, within SMa1747at 990.537 kb on - strand, within SMa1747at 990.605 kb on + strand, within SMa1747at 990.635 kb on - strand, within SMa1747at 990.635 kb on - strand, within SMa1747at 990.733 kb on + strand, within SMa1747at 990.783 kb on - strand, within SMa1747at 990.909 kb on - strand, within SMa1747at 990.909 kb on - strand, within SMa1747at 990.954 kb on - strand, within SMa1747at 990.954 kb on - strand, within SMa1747at 991.017 kb on + strand, within SMa1747at 991.027 kb on + strand, within SMa1747at 991.047 kb on - strand, within SMa1747at 991.052 kb on + strand, within SMa1747at 991.053 kb on - strand, within SMa1747at 991.126 kb on - strand, within SMa1747at 991.145 kb on + strand, within SMa1747at 991.202 kb on + strand, within SMa1747at 991.203 kb on - strand, within SMa1747at 991.203 kb on - strand, within SMa1747at 991.214 kb on + strandat 991.215 kb on - strandat 991.218 kb on - strandat 991.218 kb on - strandat 991.218 kb on - strandat 991.371 kb on - strandat 991.374 kb on - strandat 991.374 kb on - strandat 991.461 kb on + strandat 991.461 kb on + strandat 991.859 kb on + strand, within SMa1749at 991.859 kb on + strand, within SMa1749at 991.859 kb on + strand, within SMa1749at 991.859 kb on + strand, within SMa1749at 991.860 kb on - strand, within SMa1749at 991.860 kb on - strand, within SMa1749at 991.861 kb on + strand, within SMa1749at 991.892 kb on - strand, within SMa1749at 991.901 kb on + strand, within SMa1749at 991.902 kb on - strand, within SMa1749at 991.970 kb on + strand, within SMa1749at 991.970 kb on + strand, within SMa1749at 991.971 kb on - strand, within SMa1749at 992.033 kb on - strand, within SMa1749at 992.048 kb on - strand, within SMa1749at 992.063 kb on - strand, within SMa1749at 992.063 kb on - strand, within SMa1749at 992.109 kb on + strand, within SMa1749at 992.109 kb on + strand, within SMa1749at 992.109 kb on + strand, within SMa1749at 992.110 kb on - strand, within SMa1749at 992.145 kb on - strandat 992.145 kb on - strand, within SMa1749at 992.226 kb on + strand, within SMa1749at 992.229 kb on + strand, within SMa1749at 992.230 kb on - strand, within SMa1749at 992.230 kb on - strand, within SMa1749at 992.364 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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988,284 + SMa1746 0.30 -1.8
988,285 - SMa1746 0.30 +0.1
988,285 - +1.6
988,447 + SMa1746 0.46 -0.7
988,447 + SMa1746 0.46 +0.6
988,450 - SMa1746 0.47 +1.0
988,574 + SMa1746 0.59 +0.1
988,574 + SMa1746 0.59 +1.1
988,598 + SMa1746 0.61 +1.5
988,886 + -0.2
988,893 + +0.2
988,942 + -0.8
988,942 + +0.0
988,943 - +0.1
989,027 - -0.3
989,107 + +2.4
989,108 - -0.8
989,108 - -1.1
989,262 - +0.3
989,262 - -0.4
989,320 - -0.9
989,373 + +3.5
989,476 + -0.3
989,477 - +2.0
989,626 - SMa1747 0.16 -1.7
989,626 - SMa1747 0.16 -0.3
989,702 - SMa1747 0.20 +0.4
989,708 + SMa1747 0.20 -0.1
989,710 + SMa1747 0.20 -3.1
989,710 + SMa1747 0.20 +1.0
989,710 + SMa1747 0.20 -1.2
989,710 + SMa1747 0.20 -2.2
989,710 + SMa1747 0.20 +0.4
989,711 - SMa1747 0.20 +0.8
989,711 - SMa1747 0.20 -0.4
989,714 + SMa1747 0.20 -0.1
989,714 + SMa1747 0.20 -0.3
989,769 - SMa1747 0.23 -0.7
989,769 - SMa1747 0.23 -1.1
989,849 + SMa1747 0.27 +0.1
989,850 - SMa1747 0.27 -0.1
989,891 + SMa1747 0.29 -0.8
989,891 + SMa1747 0.29 +0.5
989,892 - SMa1747 0.29 -0.0
989,918 - SMa1747 0.30 -1.4
989,918 - SMa1747 0.30 +0.2
989,967 + SMa1747 0.32 -0.9
989,968 - SMa1747 0.32 -0.8
989,968 - SMa1747 0.32 -0.7
989,968 - SMa1747 0.32 -0.0
990,011 + SMa1747 0.34 -2.4
990,011 + SMa1747 0.34 +0.2
990,012 - SMa1747 0.34 -0.8
990,018 - SMa1747 0.35 +2.0
990,091 + SMa1747 0.38 +0.8
990,092 - SMa1747 0.38 -0.3
990,188 + SMa1747 0.43 -0.7
990,191 + SMa1747 0.43 +0.5
990,192 - SMa1747 0.43 -3.7
990,218 + SMa1747 0.44 -2.2
990,219 - SMa1747 0.44 +0.6
990,219 - SMa1747 0.44 +0.5
990,311 + SMa1747 0.48 +1.3
990,311 + SMa1747 0.48 -0.3
990,312 - SMa1747 0.48 -2.5
990,312 - SMa1747 0.48 +0.1
990,312 - SMa1747 0.48 -0.8
990,312 - SMa1747 0.48 +2.1
990,312 - SMa1747 0.48 -2.4
990,356 + SMa1747 0.50 -0.5
990,356 + SMa1747 0.50 -0.3
990,357 - SMa1747 0.50 +2.6
990,414 - SMa1747 0.53 +2.1
990,497 + SMa1747 0.57 -0.8
990,536 + SMa1747 0.59 +0.9
990,537 - SMa1747 0.59 -0.6
990,605 + SMa1747 0.62 +2.2
990,635 - SMa1747 0.63 +0.6
990,635 - SMa1747 0.63 -1.3
990,733 + SMa1747 0.68 +0.7
990,783 - SMa1747 0.70 +3.5
990,909 - SMa1747 0.76 -0.0
990,909 - SMa1747 0.76 -0.5
990,954 - SMa1747 0.78 +2.6
990,954 - SMa1747 0.78 +1.0
991,017 + SMa1747 0.81 +0.7
991,027 + SMa1747 0.82 -1.4
991,047 - SMa1747 0.83 +2.1
991,052 + SMa1747 0.83 +1.2
991,053 - SMa1747 0.83 +0.4
991,126 - SMa1747 0.86 +0.0
991,145 + SMa1747 0.87 -1.4
991,202 + SMa1747 0.90 +1.0
991,203 - SMa1747 0.90 -0.8
991,203 - SMa1747 0.90 +0.4
991,214 + +0.3
991,215 - +0.8
991,218 - -0.9
991,218 - +1.0
991,218 - -1.1
991,371 - -2.6
991,374 - +0.3
991,374 - -2.5
991,461 + +0.9
991,461 + -1.7
991,859 + SMa1749 0.44 +1.2
991,859 + SMa1749 0.44 -0.1
991,859 + SMa1749 0.44 -1.4
991,859 + SMa1749 0.44 -0.1
991,860 - SMa1749 0.44 -1.7
991,860 - SMa1749 0.44 +0.0
991,861 + SMa1749 0.45 -1.1
991,892 - SMa1749 0.48 -0.7
991,901 + SMa1749 0.49 -0.4
991,902 - SMa1749 0.49 +1.2
991,970 + SMa1749 0.57 -1.1
991,970 + SMa1749 0.57 +0.5
991,971 - SMa1749 0.57 +0.4
992,033 - SMa1749 0.64 -1.6
992,048 - SMa1749 0.65 +0.0
992,063 - SMa1749 0.67 -0.4
992,063 - SMa1749 0.67 +1.1
992,109 + SMa1749 0.72 +0.6
992,109 + SMa1749 0.72 +1.4
992,109 + SMa1749 0.72 -0.3
992,110 - SMa1749 0.72 +2.9
992,145 - -0.8
992,145 - SMa1749 0.76 +0.7
992,226 + SMa1749 0.85 -0.1
992,229 + SMa1749 0.85 +0.1
992,230 - SMa1749 0.86 -1.1
992,230 - SMa1749 0.86 +1.4
992,364 - -2.4

Or see this region's nucleotide sequence