Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1672 and SMa1674 are separated by 96 nucleotides SMa1674 and SMa1675 overlap by 2 nucleotides SMa1675 and SMa1676 are separated by 60 nucleotides
SMa1672: SMa1672 - hypothetical protein, at 938,402 to 938,896
SMa1672
SMa1674: SMa1674 - hypothetical protein, at 938,993 to 939,304
SMa1674
SMa1675: SMa1675 - hypothetical protein, at 939,303 to 939,953
SMa1675
SMa1676: SMa1676 - hypothetical protein, at 940,014 to 941,072
SMa1676
Position (kb) 938
939
940 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 938.171 kb on + strand at 938.172 kb on - strand at 938.565 kb on + strand, within SMa1672 at 938.619 kb on + strand, within SMa1672 at 938.620 kb on - strand, within SMa1672 at 938.620 kb on - strand, within SMa1672 at 938.800 kb on + strand, within SMa1672 at 938.800 kb on + strand, within SMa1672 at 938.801 kb on - strand, within SMa1672 at 938.801 kb on - strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.803 kb on - strand, within SMa1672 at 938.995 kb on - strand at 939.016 kb on + strand at 939.017 kb on - strand at 939.081 kb on + strand, within SMa1674 at 939.082 kb on - strand, within SMa1674 at 939.103 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.269 kb on + strand, within SMa1674 at 939.497 kb on - strand, within SMa1675 at 939.498 kb on + strand, within SMa1675 at 939.498 kb on + strand, within SMa1675 at 939.499 kb on - strand, within SMa1675 at 939.499 kb on - strand, within SMa1675 at 939.556 kb on + strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.558 kb on + strand, within SMa1675 at 939.558 kb on + strand, within SMa1675 at 939.559 kb on - strand, within SMa1675 at 939.559 kb on - strand, within SMa1675 at 939.560 kb on + strand, within SMa1675 at 939.561 kb on - strand, within SMa1675 at 939.644 kb on + strand, within SMa1675 at 939.984 kb on + strand at 939.985 kb on - strand at 939.985 kb on - strand at 940.166 kb on - strand, within SMa1676 at 940.244 kb on - strand, within SMa1676
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 938,171 + -2.4 938,172 - +1.1 938,565 + SMa1672 0.33 -0.4 938,619 + SMa1672 0.44 +0.1 938,620 - SMa1672 0.44 +0.4 938,620 - SMa1672 0.44 -0.0 938,800 + SMa1672 0.80 +0.8 938,800 + SMa1672 0.80 +0.4 938,801 - SMa1672 0.81 +1.9 938,801 - SMa1672 0.81 -0.2 938,802 + SMa1672 0.81 +1.4 938,802 + SMa1672 0.81 +0.3 938,802 + SMa1672 0.81 +0.6 938,802 + SMa1672 0.81 -3.4 938,802 + SMa1672 0.81 -2.0 938,803 - SMa1672 0.81 +2.3 938,995 - +1.2 939,016 + +0.5 939,017 - -1.1 939,081 + SMa1674 0.28 +0.2 939,082 - SMa1674 0.29 -0.6 939,103 - SMa1674 0.35 +0.8 939,267 - SMa1674 0.88 -0.5 939,267 - SMa1674 0.88 -0.9 939,267 - SMa1674 0.88 -0.1 939,267 - SMa1674 0.88 -1.1 939,269 + SMa1674 0.88 -0.8 939,497 - SMa1675 0.30 +2.2 939,498 + SMa1675 0.30 -0.2 939,498 + SMa1675 0.30 -0.2 939,499 - SMa1675 0.30 +0.9 939,499 - SMa1675 0.30 +0.3 939,556 + SMa1675 0.39 +0.0 939,557 - SMa1675 0.39 -2.3 939,557 - SMa1675 0.39 -0.9 939,557 - SMa1675 0.39 -0.1 939,558 + SMa1675 0.39 +1.4 939,558 + SMa1675 0.39 -0.6 939,559 - SMa1675 0.39 -2.1 939,559 - SMa1675 0.39 -1.6 939,560 + SMa1675 0.39 +1.0 939,561 - SMa1675 0.40 +0.3 939,644 + SMa1675 0.52 +0.0 939,984 + +0.1 939,985 - -0.1 939,985 - -0.2 940,166 - SMa1676 0.14 +0.7 940,244 - SMa1676 0.22 +0.9
Or see this region's nucleotide sequence