Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1225 and SMa1226 are separated by 79 nucleotides SMa1226 and SMa1227 are separated by 98 nucleotides SMa1227 and SMa1229 overlap by 8 nucleotides
SMa1225: SMa1225 - transcriptional regulator FixK, at 671,613 to 672,248
SMa1225
SMa1226: SMa1226 - FixT1 inhibitor of FixL autophosphorylation, at 672,328 to 672,675
SMa1226
SMa1227: SMa1227 - response regulator FixJ, at 672,774 to 673,388
SMa1227
SMa1229: SMa1229 - FixL oxygen regulated histidine kinase, at 673,381 to 674,898
SMa1229
Position (kb) 672
673
674 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 672.329 kb on + strand at 672.329 kb on + strand at 672.330 kb on - strand at 672.333 kb on + strand at 672.394 kb on + strand, within SMa1226 at 672.505 kb on + strand, within SMa1226 at 672.506 kb on - strand, within SMa1226 at 672.506 kb on - strand, within SMa1226 at 672.506 kb on - strand, within SMa1226 at 672.508 kb on + strand, within SMa1226 at 672.508 kb on + strand, within SMa1226 at 672.508 kb on + strand, within SMa1226 at 672.509 kb on - strand, within SMa1226 at 672.509 kb on - strand, within SMa1226 at 672.509 kb on - strand, within SMa1226 at 672.509 kb on - strand, within SMa1226 at 672.509 kb on - strand, within SMa1226 at 672.509 kb on - strand, within SMa1226 at 672.587 kb on + strand, within SMa1226 at 672.588 kb on - strand, within SMa1226 at 672.588 kb on - strand, within SMa1226 at 672.588 kb on - strand, within SMa1226 at 672.590 kb on + strand, within SMa1226 at 672.590 kb on + strand, within SMa1226 at 672.590 kb on + strand, within SMa1226 at 672.591 kb on - strand, within SMa1226 at 672.591 kb on - strand, within SMa1226 at 672.591 kb on - strand, within SMa1226 at 672.725 kb on + strand at 672.850 kb on - strand, within SMa1227 at 672.850 kb on - strand, within SMa1227 at 672.898 kb on + strand, within SMa1227 at 672.899 kb on - strand, within SMa1227 at 672.987 kb on - strand, within SMa1227 at 673.064 kb on + strand, within SMa1227 at 673.084 kb on - strand, within SMa1227 at 673.084 kb on - strand, within SMa1227 at 673.161 kb on + strand, within SMa1227 at 673.161 kb on + strand, within SMa1227 at 673.162 kb on - strand, within SMa1227 at 673.162 kb on - strand, within SMa1227 at 673.162 kb on - strand, within SMa1227 at 673.163 kb on + strand, within SMa1227 at 673.163 kb on + strand, within SMa1227 at 673.163 kb on + strand, within SMa1227 at 673.163 kb on + strand, within SMa1227 at 673.164 kb on - strand, within SMa1227 at 673.164 kb on - strand, within SMa1227 at 673.166 kb on - strand, within SMa1227 at 673.501 kb on - strand at 673.501 kb on - strand at 673.728 kb on + strand, within SMa1229 at 673.771 kb on + strand, within SMa1229 at 673.771 kb on + strand, within SMa1229 at 673.771 kb on + strand, within SMa1229 at 673.951 kb on + strand, within SMa1229 at 673.995 kb on + strand, within SMa1229 at 673.996 kb on - strand, within SMa1229 at 674.009 kb on + strand, within SMa1229 at 674.009 kb on + strand, within SMa1229 at 674.009 kb on + strand, within SMa1229 at 674.010 kb on - strand, within SMa1229 at 674.111 kb on - strand, within SMa1229 at 674.298 kb on - strand, within SMa1229 at 674.298 kb on - strand, within SMa1229 at 674.298 kb on - strand, within SMa1229 at 674.310 kb on - strand, within SMa1229 at 674.348 kb on - strand, within SMa1229 at 674.348 kb on - strand, within SMa1229
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 672,329 + +1.3 672,329 + +0.3 672,330 - -1.6 672,333 + +3.5 672,394 + SMa1226 0.19 +0.8 672,505 + SMa1226 0.51 -0.3 672,506 - SMa1226 0.51 -0.7 672,506 - SMa1226 0.51 +1.4 672,506 - SMa1226 0.51 +0.2 672,508 + SMa1226 0.52 +0.1 672,508 + SMa1226 0.52 -3.6 672,508 + SMa1226 0.52 -1.8 672,509 - SMa1226 0.52 -3.3 672,509 - SMa1226 0.52 +0.0 672,509 - SMa1226 0.52 -3.5 672,509 - SMa1226 0.52 -1.0 672,509 - SMa1226 0.52 -1.0 672,509 - SMa1226 0.52 -2.2 672,587 + SMa1226 0.74 -1.3 672,588 - SMa1226 0.75 -0.6 672,588 - SMa1226 0.75 -0.2 672,588 - SMa1226 0.75 -0.4 672,590 + SMa1226 0.75 +1.4 672,590 + SMa1226 0.75 -0.1 672,590 + SMa1226 0.75 -0.2 672,591 - SMa1226 0.76 -0.5 672,591 - SMa1226 0.76 -0.8 672,591 - SMa1226 0.76 +0.0 672,725 + +0.2 672,850 - SMa1227 0.12 +2.1 672,850 - SMa1227 0.12 +0.6 672,898 + SMa1227 0.20 +0.6 672,899 - SMa1227 0.20 +0.5 672,987 - SMa1227 0.35 +0.4 673,064 + SMa1227 0.47 +0.1 673,084 - SMa1227 0.50 +1.4 673,084 - SMa1227 0.50 +0.5 673,161 + SMa1227 0.63 +0.6 673,161 + SMa1227 0.63 +1.2 673,162 - SMa1227 0.63 +0.2 673,162 - SMa1227 0.63 +0.5 673,162 - SMa1227 0.63 +0.7 673,163 + SMa1227 0.63 +1.2 673,163 + SMa1227 0.63 +0.6 673,163 + SMa1227 0.63 +0.3 673,163 + SMa1227 0.63 +1.8 673,164 - SMa1227 0.63 +0.3 673,164 - SMa1227 0.63 +1.0 673,166 - SMa1227 0.64 +0.0 673,501 - -1.8 673,501 - -2.0 673,728 + SMa1229 0.23 +0.9 673,771 + SMa1229 0.26 +0.5 673,771 + SMa1229 0.26 +0.7 673,771 + SMa1229 0.26 +0.6 673,951 + SMa1229 0.38 -0.1 673,995 + SMa1229 0.40 +0.2 673,996 - SMa1229 0.41 +0.8 674,009 + SMa1229 0.41 +1.4 674,009 + SMa1229 0.41 +0.7 674,009 + SMa1229 0.41 -0.4 674,010 - SMa1229 0.41 +0.2 674,111 - SMa1229 0.48 +0.7 674,298 - SMa1229 0.60 +0.8 674,298 - SMa1229 0.60 +0.2 674,298 - SMa1229 0.60 -0.6 674,310 - SMa1229 0.61 -2.3 674,348 - SMa1229 0.64 +1.1 674,348 - SMa1229 0.64 +1.1
Or see this region's nucleotide sequence