Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0319 and SMa0320 are separated by 144 nucleotides SMa0320 and SMa0322 are separated by 57 nucleotides SMa0322 and SMa0323 are separated by 50 nucleotides
SMa0319: SMa0319 - AraC family transcriptional regulator, at 177,973 to 178,974
SMa0319
SMa0320: SMa0320 - short chain alcohol dehydrogenase-related dehydrogenase, at 179,119 to 179,868
SMa0320
SMa0322: SMa0322 - hypothetical protein, at 179,926 to 180,474
SMa0322
SMa0323: SMa0323 - hypothetical protein, at 180,525 to 180,809
SMa0323
Position (kb) 179
180 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 178.120 kb on + strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.124 kb on + strand, within SMa0319 at 178.358 kb on - strand, within SMa0319 at 178.358 kb on - strand, within SMa0319 at 178.412 kb on - strand, within SMa0319 at 178.444 kb on + strand, within SMa0319 at 178.445 kb on - strand, within SMa0319 at 178.445 kb on - strand, within SMa0319 at 178.454 kb on + strand, within SMa0319 at 178.455 kb on - strand, within SMa0319 at 178.749 kb on + strand, within SMa0319 at 178.811 kb on - strand, within SMa0319 at 178.811 kb on - strand, within SMa0319 at 178.869 kb on + strand, within SMa0319 at 178.869 kb on + strand, within SMa0319 at 178.870 kb on - strand, within SMa0319 at 179.532 kb on + strand, within SMa0320 at 179.532 kb on + strand, within SMa0320 at 179.532 kb on + strand, within SMa0320 at 179.532 kb on + strand, within SMa0320 at 179.533 kb on - strand, within SMa0320 at 179.853 kb on + strand at 179.853 kb on - strand at 180.024 kb on + strand, within SMa0322 at 180.025 kb on - strand, within SMa0322 at 180.037 kb on - strand, within SMa0322 at 180.201 kb on + strand, within SMa0322 at 180.202 kb on - strand, within SMa0322 at 180.202 kb on - strand, within SMa0322 at 180.276 kb on + strand, within SMa0322 at 180.277 kb on - strand, within SMa0322 at 180.279 kb on + strand, within SMa0322 at 180.319 kb on + strand, within SMa0322 at 180.369 kb on + strand, within SMa0322 at 180.370 kb on - strand, within SMa0322 at 180.370 kb on - strand, within SMa0322 at 180.405 kb on + strand, within SMa0322 at 180.467 kb on + strand at 180.468 kb on - strand at 180.525 kb on - strand at 180.525 kb on - strand at 180.534 kb on + strand at 180.550 kb on + strand at 180.556 kb on + strand, within SMa0323 at 180.556 kb on + strand, within SMa0323 at 180.557 kb on - strand, within SMa0323 at 180.557 kb on - strand, within SMa0323 at 180.557 kb on - strand, within SMa0323 at 180.741 kb on + strand, within SMa0323 at 180.790 kb on + strand at 180.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 178,120 + SMa0319 0.15 -1.6 178,121 - SMa0319 0.15 +0.2 178,121 - SMa0319 0.15 -0.1 178,121 - SMa0319 0.15 -0.8 178,124 + SMa0319 0.15 +1.2 178,358 - SMa0319 0.38 +0.1 178,358 - SMa0319 0.38 -1.3 178,412 - SMa0319 0.44 +0.2 178,444 + SMa0319 0.47 +0.0 178,445 - SMa0319 0.47 -1.0 178,445 - SMa0319 0.47 +0.7 178,454 + SMa0319 0.48 +0.8 178,455 - SMa0319 0.48 -2.6 178,749 + SMa0319 0.77 +3.9 178,811 - SMa0319 0.84 +1.0 178,811 - SMa0319 0.84 +0.1 178,869 + SMa0319 0.89 +0.1 178,869 + SMa0319 0.89 -0.1 178,870 - SMa0319 0.90 -0.0 179,532 + SMa0320 0.55 +1.9 179,532 + SMa0320 0.55 -0.3 179,532 + SMa0320 0.55 +1.7 179,532 + SMa0320 0.55 +0.6 179,533 - SMa0320 0.55 +0.4 179,853 + -0.3 179,853 - -1.8 180,024 + SMa0322 0.18 +0.2 180,025 - SMa0322 0.18 +0.4 180,037 - SMa0322 0.20 +1.7 180,201 + SMa0322 0.50 -1.1 180,202 - SMa0322 0.50 -0.3 180,202 - SMa0322 0.50 -2.2 180,276 + SMa0322 0.64 -0.7 180,277 - SMa0322 0.64 -2.1 180,279 + SMa0322 0.64 +0.9 180,319 + SMa0322 0.72 +0.9 180,369 + SMa0322 0.81 -0.6 180,370 - SMa0322 0.81 +2.5 180,370 - SMa0322 0.81 -0.1 180,405 + SMa0322 0.87 -2.0 180,467 + -2.3 180,468 - -0.2 180,525 - +0.5 180,525 - -3.8 180,534 + +1.8 180,550 + +0.6 180,556 + SMa0323 0.11 -0.3 180,556 + SMa0323 0.11 +2.0 180,557 - SMa0323 0.11 -0.8 180,557 - SMa0323 0.11 -0.6 180,557 - SMa0323 0.11 +0.7 180,741 + SMa0323 0.76 +0.0 180,790 + -0.2 180,791 - +0.1
Or see this region's nucleotide sequence