Strain Fitness in Sinorhizobium meliloti 1021 around SMa0286

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0281 and SMa0285 are separated by 360 nucleotidesSMa0285 and SMa0286 are separated by 200 nucleotidesSMa0286 and SMa0287 are separated by 10 nucleotidesSMa0287 and SMa0288 overlap by 4 nucleotides SMa0281: SMa0281 - MerR family transcriptional regulator, at 158,400 to 158,804 SMa0281 SMa0285: SMa0285 - hypothetical protein, at 159,165 to 159,389 SMa0285 SMa0286: SMa0286 - hypothetical protein, at 159,590 to 160,051 SMa0286 SMa0287: SMa0287 - hypothetical protein, at 160,062 to 160,508 SMa0287 SMa0288: SMa0288 - hypothetical protein, at 160,505 to 161,341 SMa0288 Position (kb) 159 160 161Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 158.712 kb on - strand, within SMa0281at 158.735 kb on + strand, within SMa0281at 158.735 kb on + strand, within SMa0281at 158.846 kb on - strandat 158.926 kb on + strandat 158.927 kb on - strandat 158.927 kb on - strandat 158.927 kb on - strandat 158.975 kb on - strandat 158.975 kb on - strandat 159.012 kb on - strandat 159.072 kb on - strandat 159.135 kb on + strandat 159.135 kb on + strandat 159.136 kb on - strandat 159.136 kb on - strandat 159.136 kb on - strandat 159.416 kb on + strandat 159.416 kb on + strandat 159.416 kb on + strandat 159.417 kb on - strandat 159.417 kb on - strandat 159.515 kb on + strandat 159.515 kb on + strandat 159.516 kb on - strandat 159.528 kb on + strandat 159.529 kb on - strandat 159.529 kb on - strandat 159.591 kb on + strandat 159.591 kb on + strandat 159.592 kb on - strandat 159.609 kb on + strandat 159.610 kb on - strandat 159.721 kb on + strand, within SMa0286at 159.880 kb on + strand, within SMa0286at 160.076 kb on - strandat 160.160 kb on + strand, within SMa0287at 160.162 kb on + strand, within SMa0287at 160.162 kb on + strand, within SMa0287at 160.163 kb on - strand, within SMa0287at 160.163 kb on - strand, within SMa0287at 160.279 kb on + strand, within SMa0287at 160.347 kb on + strand, within SMa0287at 160.348 kb on - strand, within SMa0287at 160.366 kb on + strand, within SMa0287at 160.399 kb on - strand, within SMa0287at 160.554 kb on - strandat 160.554 kb on - strandat 160.663 kb on + strand, within SMa0288at 160.663 kb on + strand, within SMa0288at 160.664 kb on - strand, within SMa0288at 160.735 kb on - strand, within SMa0288at 160.751 kb on + strand, within SMa0288at 160.752 kb on - strand, within SMa0288at 160.803 kb on + strand, within SMa0288at 160.804 kb on - strand, within SMa0288at 160.891 kb on - strand, within SMa0288at 160.891 kb on - strand, within SMa0288

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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158,712 - SMa0281 0.77 +0.2
158,735 + SMa0281 0.83 +0.4
158,735 + SMa0281 0.83 -0.3
158,846 - -2.0
158,926 + +0.3
158,927 - -1.1
158,927 - -1.1
158,927 - -0.3
158,975 - -0.3
158,975 - +0.7
159,012 - -1.5
159,072 - +1.1
159,135 + -0.5
159,135 + -0.2
159,136 - +1.2
159,136 - -0.8
159,136 - +0.8
159,416 + -3.2
159,416 + -0.4
159,416 + +1.2
159,417 - +0.7
159,417 - -0.2
159,515 + +0.7
159,515 + +0.1
159,516 - -1.5
159,528 + +1.1
159,529 - -0.2
159,529 - +0.0
159,591 + +0.6
159,591 + +0.4
159,592 - +0.1
159,609 + -3.8
159,610 - -0.7
159,721 + SMa0286 0.28 +3.1
159,880 + SMa0286 0.63 +1.0
160,076 - -0.6
160,160 + SMa0287 0.22 -0.4
160,162 + SMa0287 0.22 +2.6
160,162 + SMa0287 0.22 +0.7
160,163 - SMa0287 0.23 -1.2
160,163 - SMa0287 0.23 -0.0
160,279 + SMa0287 0.49 +0.5
160,347 + SMa0287 0.64 +0.4
160,348 - SMa0287 0.64 -2.2
160,366 + SMa0287 0.68 +0.3
160,399 - SMa0287 0.75 -1.9
160,554 - +0.3
160,554 - -0.7
160,663 + SMa0288 0.19 -0.1
160,663 + SMa0288 0.19 -1.5
160,664 - SMa0288 0.19 +1.2
160,735 - SMa0288 0.27 -2.8
160,751 + SMa0288 0.29 +0.7
160,752 - SMa0288 0.30 +0.1
160,803 + SMa0288 0.36 +0.6
160,804 - SMa0288 0.36 -0.1
160,891 - SMa0288 0.46 -0.1
160,891 - SMa0288 0.46 +0.7

Or see this region's nucleotide sequence