Strain Fitness in Sinorhizobium meliloti 1021 around SMa0093

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0091 and SMa0093 are separated by 261 nucleotidesSMa0093 and SMa0095 are separated by 50 nucleotides SMa0091: SMa0091 - hypothetical protein, at 47,225 to 47,920 SMa0091 SMa0093: SMa0093 - Branched-chain amino acid aminotransferase, at 48,182 to 49,033 SMa0093 SMa0095: SMa0095 - D-aminopeptidase, at 49,084 to 50,121 SMa0095 Position (kb) 48 49 50Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 47.223 kb on - strandat 47.625 kb on - strand, within SMa0091at 47.646 kb on - strand, within SMa0091at 47.687 kb on + strand, within SMa0091at 47.688 kb on - strand, within SMa0091at 47.688 kb on - strand, within SMa0091at 47.740 kb on + strand, within SMa0091at 47.784 kb on - strand, within SMa0091at 47.834 kb on + strand, within SMa0091at 47.834 kb on + strand, within SMa0091at 47.879 kb on + strandat 47.880 kb on - strandat 47.889 kb on - strandat 47.993 kb on + strandat 47.993 kb on + strandat 48.039 kb on + strandat 48.040 kb on - strandat 48.040 kb on - strandat 48.197 kb on + strandat 48.197 kb on + strandat 48.278 kb on + strand, within SMa0093at 48.279 kb on - strand, within SMa0093at 48.279 kb on - strand, within SMa0093at 48.450 kb on - strand, within SMa0093at 48.767 kb on - strand, within SMa0093at 49.005 kb on - strandat 49.032 kb on - strandat 49.281 kb on + strand, within SMa0095at 50.007 kb on + strand, within SMa0095at 50.008 kb on - strand, within SMa0095

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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47,223 - +1.7
47,625 - SMa0091 0.57 -3.0
47,646 - SMa0091 0.60 -0.8
47,687 + SMa0091 0.66 +0.1
47,688 - SMa0091 0.67 -0.2
47,688 - SMa0091 0.67 +1.9
47,740 + SMa0091 0.74 -4.0
47,784 - SMa0091 0.80 -0.1
47,834 + SMa0091 0.88 +0.4
47,834 + SMa0091 0.88 -0.7
47,879 + +0.8
47,880 - +1.2
47,889 - +1.1
47,993 + -0.3
47,993 + -3.1
48,039 + +1.2
48,040 - -1.3
48,040 - +0.9
48,197 + -1.4
48,197 + -0.1
48,278 + SMa0093 0.11 -2.8
48,279 - SMa0093 0.11 -1.1
48,279 - SMa0093 0.11 -0.6
48,450 - SMa0093 0.31 -0.6
48,767 - SMa0093 0.69 -4.3
49,005 - +1.7
49,032 - -1.3
49,281 + SMa0095 0.19 +0.8
50,007 + SMa0095 0.89 -0.2
50,008 - SMa0095 0.89 -0.4

Or see this region's nucleotide sequence