Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21554

Experiment: D-Glucosamine Hydrochloride (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21551 and SM_b21552 are separated by 168 nucleotidesSM_b21552 and SM_b21554 are separated by 202 nucleotidesSM_b21554 and SM_b21555 are separated by 499 nucleotides SM_b21551: SM_b21551 - hypothetical protein, at 1,090,398 to 1,091,324 _b21551 SM_b21552: SM_b21552 - aminoglycoside 6'-N-acetyltransferase, amikacin resistance protein, at 1,091,493 to 1,091,996 _b21552 SM_b21554: SM_b21554 - hypothetical protein, at 1,092,199 to 1,092,741 _b21554 SM_b21555: SM_b21555 - potassium-efflux protein, at 1,093,241 to 1,095,022 _b21555 Position (kb) 1092 1093Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1091.322 kb on + strandat 1091.323 kb on - strandat 1091.328 kb on - strandat 1091.333 kb on + strandat 1091.333 kb on + strandat 1091.484 kb on + strandat 1091.485 kb on - strandat 1091.552 kb on + strand, within SM_b21552at 1091.552 kb on + strand, within SM_b21552at 1091.561 kb on + strand, within SM_b21552at 1091.561 kb on + strand, within SM_b21552at 1091.561 kb on + strand, within SM_b21552at 1091.575 kb on - strand, within SM_b21552at 1091.616 kb on + strand, within SM_b21552at 1091.659 kb on + strand, within SM_b21552at 1091.659 kb on + strand, within SM_b21552at 1091.659 kb on + strand, within SM_b21552at 1091.667 kb on + strand, within SM_b21552at 1091.669 kb on + strand, within SM_b21552at 1091.670 kb on - strand, within SM_b21552at 1091.670 kb on - strand, within SM_b21552at 1091.715 kb on + strand, within SM_b21552at 1091.715 kb on + strand, within SM_b21552at 1091.737 kb on + strand, within SM_b21552at 1091.737 kb on + strand, within SM_b21552at 1091.738 kb on - strand, within SM_b21552at 1091.767 kb on + strand, within SM_b21552at 1091.767 kb on + strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.768 kb on - strand, within SM_b21552at 1091.771 kb on + strand, within SM_b21552at 1091.813 kb on + strand, within SM_b21552at 1091.813 kb on + strand, within SM_b21552at 1091.813 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.826 kb on + strand, within SM_b21552at 1091.827 kb on - strand, within SM_b21552at 1091.827 kb on - strandat 1091.827 kb on - strand, within SM_b21552at 1091.827 kb on - strand, within SM_b21552at 1091.882 kb on + strand, within SM_b21552at 1091.896 kb on + strand, within SM_b21552at 1091.897 kb on - strandat 1091.900 kb on + strand, within SM_b21552at 1091.971 kb on + strandat 1091.972 kb on - strandat 1091.972 kb on - strandat 1091.972 kb on - strandat 1091.994 kb on + strandat 1091.995 kb on - strandat 1092.010 kb on + strandat 1092.010 kb on + strandat 1092.109 kb on + strandat 1092.152 kb on + strandat 1092.153 kb on - strandat 1092.218 kb on + strandat 1092.219 kb on - strandat 1092.251 kb on + strandat 1092.251 kb on + strandat 1092.252 kb on - strandat 1092.374 kb on + strand, within SM_b21554at 1092.375 kb on - strand, within SM_b21554at 1092.375 kb on - strand, within SM_b21554at 1092.424 kb on + strand, within SM_b21554at 1092.488 kb on + strand, within SM_b21554at 1092.601 kb on + strand, within SM_b21554at 1092.620 kb on + strand, within SM_b21554at 1092.620 kb on + strand, within SM_b21554at 1092.620 kb on + strand, within SM_b21554at 1092.621 kb on - strand, within SM_b21554at 1092.628 kb on - strand, within SM_b21554at 1092.817 kb on + strandat 1092.849 kb on + strandat 1092.850 kb on - strandat 1092.983 kb on - strandat 1093.064 kb on + strandat 1093.065 kb on - strandat 1093.098 kb on - strandat 1093.098 kb on - strandat 1093.098 kb on - strandat 1093.105 kb on - strandat 1093.105 kb on - strandat 1093.204 kb on + strandat 1093.205 kb on - strandat 1093.263 kb on + strandat 1093.264 kb on - strandat 1093.352 kb on + strandat 1093.353 kb on - strandat 1093.527 kb on + strand, within SM_b21555at 1093.527 kb on + strand, within SM_b21555at 1093.720 kb on + strand, within SM_b21555at 1093.720 kb on + strand, within SM_b21555at 1093.721 kb on - strand, within SM_b21555at 1093.721 kb on - strand, within SM_b21555at 1093.721 kb on - strand, within SM_b21555

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
remove
1,091,322 + +1.2
1,091,323 - +0.2
1,091,328 - -1.2
1,091,333 + -0.3
1,091,333 + +0.8
1,091,484 + -0.2
1,091,485 - -0.7
1,091,552 + SM_b21552 0.12 +1.1
1,091,552 + SM_b21552 0.12 +0.5
1,091,561 + SM_b21552 0.13 +1.3
1,091,561 + SM_b21552 0.13 -0.3
1,091,561 + SM_b21552 0.13 +0.2
1,091,575 - SM_b21552 0.16 +1.5
1,091,616 + SM_b21552 0.24 -0.1
1,091,659 + SM_b21552 0.33 +1.2
1,091,659 + SM_b21552 0.33 -0.0
1,091,659 + SM_b21552 0.33 -0.9
1,091,667 + SM_b21552 0.35 +1.0
1,091,669 + SM_b21552 0.35 +0.9
1,091,670 - SM_b21552 0.35 -3.1
1,091,670 - SM_b21552 0.35 -0.3
1,091,715 + SM_b21552 0.44 -1.0
1,091,715 + SM_b21552 0.44 +1.0
1,091,737 + SM_b21552 0.48 -0.5
1,091,737 + SM_b21552 0.48 +0.7
1,091,738 - SM_b21552 0.49 -0.0
1,091,767 + SM_b21552 0.54 +1.7
1,091,767 + SM_b21552 0.54 +1.2
1,091,768 - SM_b21552 0.55 +0.5
1,091,768 - SM_b21552 0.55 +0.1
1,091,768 - SM_b21552 0.55 +0.4
1,091,768 - SM_b21552 0.55 -0.1
1,091,771 + SM_b21552 0.55 +4.7
1,091,813 + SM_b21552 0.63 +0.1
1,091,813 + SM_b21552 0.63 -1.0
1,091,813 + SM_b21552 0.63 -0.3
1,091,826 + SM_b21552 0.66 -0.4
1,091,826 + SM_b21552 0.66 -0.5
1,091,826 + SM_b21552 0.66 +0.8
1,091,826 + SM_b21552 0.66 +1.1
1,091,826 + SM_b21552 0.66 -0.7
1,091,827 - SM_b21552 0.66 -0.9
1,091,827 - +2.9
1,091,827 - SM_b21552 0.66 -3.5
1,091,827 - SM_b21552 0.66 +0.5
1,091,882 + SM_b21552 0.77 -0.1
1,091,896 + SM_b21552 0.80 +0.6
1,091,897 - +3.6
1,091,900 + SM_b21552 0.81 +0.5
1,091,971 + -0.2
1,091,972 - -0.2
1,091,972 - +0.9
1,091,972 - -0.6
1,091,994 + -0.4
1,091,995 - +2.6
1,092,010 + -1.6
1,092,010 + -0.3
1,092,109 + -0.9
1,092,152 + +0.8
1,092,153 - +1.8
1,092,218 + +0.3
1,092,219 - -0.1
1,092,251 + -0.1
1,092,251 + -0.3
1,092,252 - -3.8
1,092,374 + SM_b21554 0.32 -1.8
1,092,375 - SM_b21554 0.32 +0.5
1,092,375 - SM_b21554 0.32 -1.0
1,092,424 + SM_b21554 0.41 +0.2
1,092,488 + SM_b21554 0.53 +0.8
1,092,601 + SM_b21554 0.74 +2.6
1,092,620 + SM_b21554 0.78 +1.7
1,092,620 + SM_b21554 0.78 +2.1
1,092,620 + SM_b21554 0.78 +1.3
1,092,621 - SM_b21554 0.78 +1.6
1,092,628 - SM_b21554 0.79 +0.2
1,092,817 + -0.3
1,092,849 + -0.0
1,092,850 - +0.4
1,092,983 - +1.9
1,093,064 + +0.3
1,093,065 - +0.4
1,093,098 - -0.3
1,093,098 - +0.9
1,093,098 - -1.0
1,093,105 - -0.1
1,093,105 - -0.6
1,093,204 + +2.2
1,093,205 - +0.4
1,093,263 + -0.3
1,093,264 - -0.8
1,093,352 + +0.9
1,093,353 - +2.5
1,093,527 + SM_b21555 0.16 -0.2
1,093,527 + SM_b21555 0.16 -1.3
1,093,720 + SM_b21555 0.27 +0.7
1,093,720 + SM_b21555 0.27 -0.5
1,093,721 - SM_b21555 0.27 +1.4
1,093,721 - SM_b21555 0.27 +0.7
1,093,721 - SM_b21555 0.27 +0.6

Or see this region's nucleotide sequence