Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21551 and SM_b21552 are separated by 168 nucleotides SM_b21552 and SM_b21554 are separated by 202 nucleotides SM_b21554 and SM_b21555 are separated by 499 nucleotides
SM_b21551: SM_b21551 - hypothetical protein, at 1,090,398 to 1,091,324
_b21551
SM_b21552: SM_b21552 - aminoglycoside 6'-N-acetyltransferase, amikacin resistance protein, at 1,091,493 to 1,091,996
_b21552
SM_b21554: SM_b21554 - hypothetical protein, at 1,092,199 to 1,092,741
_b21554
SM_b21555: SM_b21555 - potassium-efflux protein, at 1,093,241 to 1,095,022
_b21555
Position (kb)
1092
1093 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1091.322 kb on + strand at 1091.323 kb on - strand at 1091.328 kb on - strand at 1091.333 kb on + strand at 1091.333 kb on + strand at 1091.484 kb on + strand at 1091.485 kb on - strand at 1091.552 kb on + strand, within SM_b21552 at 1091.552 kb on + strand, within SM_b21552 at 1091.561 kb on + strand, within SM_b21552 at 1091.561 kb on + strand, within SM_b21552 at 1091.561 kb on + strand, within SM_b21552 at 1091.575 kb on - strand, within SM_b21552 at 1091.616 kb on + strand, within SM_b21552 at 1091.659 kb on + strand, within SM_b21552 at 1091.659 kb on + strand, within SM_b21552 at 1091.659 kb on + strand, within SM_b21552 at 1091.667 kb on + strand, within SM_b21552 at 1091.669 kb on + strand, within SM_b21552 at 1091.670 kb on - strand, within SM_b21552 at 1091.670 kb on - strand, within SM_b21552 at 1091.715 kb on + strand, within SM_b21552 at 1091.715 kb on + strand, within SM_b21552 at 1091.737 kb on + strand, within SM_b21552 at 1091.737 kb on + strand, within SM_b21552 at 1091.738 kb on - strand, within SM_b21552 at 1091.767 kb on + strand, within SM_b21552 at 1091.767 kb on + strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.768 kb on - strand, within SM_b21552 at 1091.771 kb on + strand, within SM_b21552 at 1091.813 kb on + strand, within SM_b21552 at 1091.813 kb on + strand, within SM_b21552 at 1091.813 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.826 kb on + strand, within SM_b21552 at 1091.827 kb on - strand, within SM_b21552 at 1091.827 kb on - strand at 1091.827 kb on - strand, within SM_b21552 at 1091.827 kb on - strand, within SM_b21552 at 1091.882 kb on + strand, within SM_b21552 at 1091.896 kb on + strand, within SM_b21552 at 1091.897 kb on - strand at 1091.900 kb on + strand, within SM_b21552 at 1091.971 kb on + strand at 1091.972 kb on - strand at 1091.972 kb on - strand at 1091.972 kb on - strand at 1091.994 kb on + strand at 1091.995 kb on - strand at 1092.010 kb on + strand at 1092.010 kb on + strand at 1092.109 kb on + strand at 1092.152 kb on + strand at 1092.153 kb on - strand at 1092.218 kb on + strand at 1092.219 kb on - strand at 1092.251 kb on + strand at 1092.251 kb on + strand at 1092.252 kb on - strand at 1092.374 kb on + strand, within SM_b21554 at 1092.375 kb on - strand, within SM_b21554 at 1092.375 kb on - strand, within SM_b21554 at 1092.424 kb on + strand, within SM_b21554 at 1092.488 kb on + strand, within SM_b21554 at 1092.601 kb on + strand, within SM_b21554 at 1092.620 kb on + strand, within SM_b21554 at 1092.620 kb on + strand, within SM_b21554 at 1092.620 kb on + strand, within SM_b21554 at 1092.621 kb on - strand, within SM_b21554 at 1092.628 kb on - strand, within SM_b21554 at 1092.817 kb on + strand at 1092.849 kb on + strand at 1092.850 kb on - strand at 1092.983 kb on - strand at 1093.064 kb on + strand at 1093.065 kb on - strand at 1093.098 kb on - strand at 1093.098 kb on - strand at 1093.098 kb on - strand at 1093.105 kb on - strand at 1093.105 kb on - strand at 1093.204 kb on + strand at 1093.205 kb on - strand at 1093.263 kb on + strand at 1093.264 kb on - strand at 1093.352 kb on + strand at 1093.353 kb on - strand at 1093.527 kb on + strand, within SM_b21555 at 1093.527 kb on + strand, within SM_b21555 at 1093.720 kb on + strand, within SM_b21555 at 1093.720 kb on + strand, within SM_b21555 at 1093.721 kb on - strand, within SM_b21555 at 1093.721 kb on - strand, within SM_b21555 at 1093.721 kb on - strand, within SM_b21555
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 1,091,322 + +1.2 1,091,323 - +0.2 1,091,328 - -1.2 1,091,333 + -0.3 1,091,333 + +0.8 1,091,484 + -0.2 1,091,485 - -0.7 1,091,552 + SM_b21552 0.12 +1.1 1,091,552 + SM_b21552 0.12 +0.5 1,091,561 + SM_b21552 0.13 +1.3 1,091,561 + SM_b21552 0.13 -0.3 1,091,561 + SM_b21552 0.13 +0.2 1,091,575 - SM_b21552 0.16 +1.5 1,091,616 + SM_b21552 0.24 -0.1 1,091,659 + SM_b21552 0.33 +1.2 1,091,659 + SM_b21552 0.33 -0.0 1,091,659 + SM_b21552 0.33 -0.9 1,091,667 + SM_b21552 0.35 +1.0 1,091,669 + SM_b21552 0.35 +0.9 1,091,670 - SM_b21552 0.35 -3.1 1,091,670 - SM_b21552 0.35 -0.3 1,091,715 + SM_b21552 0.44 -1.0 1,091,715 + SM_b21552 0.44 +1.0 1,091,737 + SM_b21552 0.48 -0.5 1,091,737 + SM_b21552 0.48 +0.7 1,091,738 - SM_b21552 0.49 -0.0 1,091,767 + SM_b21552 0.54 +1.7 1,091,767 + SM_b21552 0.54 +1.2 1,091,768 - SM_b21552 0.55 +0.5 1,091,768 - SM_b21552 0.55 +0.1 1,091,768 - SM_b21552 0.55 +0.4 1,091,768 - SM_b21552 0.55 -0.1 1,091,771 + SM_b21552 0.55 +4.7 1,091,813 + SM_b21552 0.63 +0.1 1,091,813 + SM_b21552 0.63 -1.0 1,091,813 + SM_b21552 0.63 -0.3 1,091,826 + SM_b21552 0.66 -0.4 1,091,826 + SM_b21552 0.66 -0.5 1,091,826 + SM_b21552 0.66 +0.8 1,091,826 + SM_b21552 0.66 +1.1 1,091,826 + SM_b21552 0.66 -0.7 1,091,827 - SM_b21552 0.66 -0.9 1,091,827 - +2.9 1,091,827 - SM_b21552 0.66 -3.5 1,091,827 - SM_b21552 0.66 +0.5 1,091,882 + SM_b21552 0.77 -0.1 1,091,896 + SM_b21552 0.80 +0.6 1,091,897 - +3.6 1,091,900 + SM_b21552 0.81 +0.5 1,091,971 + -0.2 1,091,972 - -0.2 1,091,972 - +0.9 1,091,972 - -0.6 1,091,994 + -0.4 1,091,995 - +2.6 1,092,010 + -1.6 1,092,010 + -0.3 1,092,109 + -0.9 1,092,152 + +0.8 1,092,153 - +1.8 1,092,218 + +0.3 1,092,219 - -0.1 1,092,251 + -0.1 1,092,251 + -0.3 1,092,252 - -3.8 1,092,374 + SM_b21554 0.32 -1.8 1,092,375 - SM_b21554 0.32 +0.5 1,092,375 - SM_b21554 0.32 -1.0 1,092,424 + SM_b21554 0.41 +0.2 1,092,488 + SM_b21554 0.53 +0.8 1,092,601 + SM_b21554 0.74 +2.6 1,092,620 + SM_b21554 0.78 +1.7 1,092,620 + SM_b21554 0.78 +2.1 1,092,620 + SM_b21554 0.78 +1.3 1,092,621 - SM_b21554 0.78 +1.6 1,092,628 - SM_b21554 0.79 +0.2 1,092,817 + -0.3 1,092,849 + -0.0 1,092,850 - +0.4 1,092,983 - +1.9 1,093,064 + +0.3 1,093,065 - +0.4 1,093,098 - -0.3 1,093,098 - +0.9 1,093,098 - -1.0 1,093,105 - -0.1 1,093,105 - -0.6 1,093,204 + +2.2 1,093,205 - +0.4 1,093,263 + -0.3 1,093,264 - -0.8 1,093,352 + +0.9 1,093,353 - +2.5 1,093,527 + SM_b21555 0.16 -0.2 1,093,527 + SM_b21555 0.16 -1.3 1,093,720 + SM_b21555 0.27 +0.7 1,093,720 + SM_b21555 0.27 -0.5 1,093,721 - SM_b21555 0.27 +1.4 1,093,721 - SM_b21555 0.27 +0.7 1,093,721 - SM_b21555 0.27 +0.6
Or see this region's nucleotide sequence