Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21510

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21508 and SM_b21509 are separated by 173 nucleotidesSM_b21509 and SM_b21510 overlap by 269 nucleotidesSM_b21510 and SM_b21511 are separated by 13 nucleotidesSM_b21511 and SM_b21512 are separated by 59 nucleotides SM_b21508: SM_b21508 - dihydrodipicolinate synthetase, at 1,433,836 to 1,434,750 _b21508 SM_b21509: SM_b21509 - plasmid stability protein, at 1,434,924 to 1,435,436 _b21509 SM_b21510: SM_b21510 - plasmid stability protein, at 1,435,168 to 1,435,293 _b21510 SM_b21511: SM_b21511 - plasmid stability protein, at 1,435,307 to 1,435,552 _b21511 SM_b21512: SM_b21512 - hypothetical protein, at 1,435,612 to 1,436,760 _b21512 Position (kb) 1435 1436Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1434.267 kb on + strand, within SM_b21508at 1434.268 kb on - strand, within SM_b21508at 1434.268 kb on - strand, within SM_b21508at 1434.268 kb on - strand, within SM_b21508at 1434.333 kb on + strand, within SM_b21508at 1434.338 kb on + strand, within SM_b21508at 1434.389 kb on + strand, within SM_b21508at 1434.390 kb on - strand, within SM_b21508at 1434.416 kb on + strand, within SM_b21508at 1434.417 kb on - strand, within SM_b21508at 1434.422 kb on - strand, within SM_b21508at 1434.593 kb on + strand, within SM_b21508at 1434.594 kb on - strand, within SM_b21508at 1434.792 kb on - strandat 1435.126 kb on + strand, within SM_b21509at 1435.230 kb on - strandat 1435.265 kb on + strandat 1435.266 kb on - strandat 1435.266 kb on - strandat 1435.266 kb on - strandat 1435.301 kb on + strand, within SM_b21509at 1435.390 kb on + strandat 1435.391 kb on - strandat 1435.391 kb on - strandat 1435.395 kb on + strandat 1435.396 kb on - strandat 1435.396 kb on - strandat 1435.434 kb on + strandat 1435.526 kb on + strand, within SM_b21511at 1435.561 kb on + strandat 1435.561 kb on + strandat 1435.562 kb on - strandat 1435.565 kb on + strandat 1435.565 kb on + strandat 1435.566 kb on - strandat 1435.566 kb on - strandat 1435.602 kb on + strandat 1435.602 kb on + strandat 1435.664 kb on + strandat 1435.664 kb on + strandat 1435.664 kb on + strandat 1435.664 kb on + strandat 1435.665 kb on - strandat 1435.665 kb on - strandat 1435.665 kb on - strandat 1435.665 kb on - strandat 1435.725 kb on - strandat 1435.764 kb on + strand, within SM_b21512at 1435.764 kb on + strand, within SM_b21512at 1435.765 kb on - strand, within SM_b21512at 1435.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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1,434,267 + SM_b21508 0.47 -1.0
1,434,268 - SM_b21508 0.47 -0.8
1,434,268 - SM_b21508 0.47 -2.6
1,434,268 - SM_b21508 0.47 +0.2
1,434,333 + SM_b21508 0.54 +0.8
1,434,338 + SM_b21508 0.55 -1.4
1,434,389 + SM_b21508 0.60 +0.0
1,434,390 - SM_b21508 0.61 -0.8
1,434,416 + SM_b21508 0.63 -2.2
1,434,417 - SM_b21508 0.63 +1.2
1,434,422 - SM_b21508 0.64 +0.7
1,434,593 + SM_b21508 0.83 +0.2
1,434,594 - SM_b21508 0.83 -0.7
1,434,792 - +1.4
1,435,126 + SM_b21509 0.39 -4.1
1,435,230 - -0.8
1,435,265 + +1.1
1,435,266 - -0.5
1,435,266 - +1.0
1,435,266 - +0.3
1,435,301 + SM_b21509 0.73 -0.4
1,435,390 + +0.1
1,435,391 - -1.8
1,435,391 - -0.1
1,435,395 + +3.2
1,435,396 - -0.1
1,435,396 - +0.4
1,435,434 + +0.9
1,435,526 + SM_b21511 0.89 +1.3
1,435,561 + -0.3
1,435,561 + -0.1
1,435,562 - -1.9
1,435,565 + -1.3
1,435,565 + +4.4
1,435,566 - +0.1
1,435,566 - -0.3
1,435,602 + +0.0
1,435,602 + +1.8
1,435,664 + +0.4
1,435,664 + +1.2
1,435,664 + -2.2
1,435,664 + +0.1
1,435,665 - -0.6
1,435,665 - -0.3
1,435,665 - +1.5
1,435,665 - -0.4
1,435,725 - +0.3
1,435,764 + SM_b21512 0.13 +0.0
1,435,764 + SM_b21512 0.13 +0.2
1,435,765 - SM_b21512 0.13 +3.0
1,435,808 + +1.2

Or see this region's nucleotide sequence