Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21336 and SM_b21337 are separated by 126 nucleotides SM_b21337 and SM_b21338 are separated by 3 nucleotides SM_b21338 and SM_b21339 are separated by 1 nucleotides
SM_b21336: SM_b21336 - AraC family transcriptional regulator, at 1,002,815 to 1,003,759
_b21336
SM_b21337: SM_b21337 - iron-sulfur-binding protein, at 1,003,886 to 1,004,548
_b21337
SM_b21338: SM_b21338 - molybdopterin-binding protein, at 1,004,552 to 1,005,457
_b21338
SM_b21339: SM_b21339 - N-terminal part of the catalytic subunit of an oxidoreductase like aldehyde oxidase or xanthine dehydrogenase, at 1,005,459 to 1,005,791
_b21339
Position (kb)
1003
1004
1005 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1003.035 kb on + strand, within SM_b21336 at 1003.101 kb on - strand, within SM_b21336 at 1003.101 kb on - strand, within SM_b21336 at 1003.184 kb on - strand, within SM_b21336 at 1003.184 kb on - strand, within SM_b21336 at 1003.188 kb on - strand, within SM_b21336 at 1003.216 kb on + strand, within SM_b21336 at 1003.260 kb on + strand, within SM_b21336 at 1003.261 kb on - strand, within SM_b21336 at 1003.314 kb on + strand, within SM_b21336 at 1003.314 kb on + strand, within SM_b21336 at 1003.343 kb on + strand, within SM_b21336 at 1003.343 kb on + strand, within SM_b21336 at 1003.344 kb on - strand, within SM_b21336 at 1003.344 kb on - strand, within SM_b21336 at 1003.381 kb on - strand, within SM_b21336 at 1003.574 kb on + strand, within SM_b21336 at 1003.581 kb on - strand, within SM_b21336 at 1003.637 kb on - strand, within SM_b21336 at 1004.340 kb on - strand at 1004.340 kb on - strand, within SM_b21337 at 1004.483 kb on - strand at 1004.502 kb on - strand at 1004.567 kb on + strand at 1004.777 kb on - strand at 1004.777 kb on - strand, within SM_b21338 at 1004.860 kb on - strand, within SM_b21338 at 1004.860 kb on - strand, within SM_b21338 at 1004.872 kb on + strand, within SM_b21338 at 1004.919 kb on - strand, within SM_b21338 at 1005.131 kb on + strand, within SM_b21338 at 1005.200 kb on - strand, within SM_b21338 at 1005.261 kb on - strand, within SM_b21338
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 1,003,035 + SM_b21336 0.23 -0.3 1,003,101 - SM_b21336 0.30 -1.9 1,003,101 - SM_b21336 0.30 -0.3 1,003,184 - SM_b21336 0.39 -0.6 1,003,184 - SM_b21336 0.39 +0.8 1,003,188 - SM_b21336 0.39 +0.7 1,003,216 + SM_b21336 0.42 -1.1 1,003,260 + SM_b21336 0.47 +0.4 1,003,261 - SM_b21336 0.47 -0.6 1,003,314 + SM_b21336 0.53 -0.1 1,003,314 + SM_b21336 0.53 +1.2 1,003,343 + SM_b21336 0.56 -3.4 1,003,343 + SM_b21336 0.56 +0.2 1,003,344 - SM_b21336 0.56 -3.9 1,003,344 - SM_b21336 0.56 -3.2 1,003,381 - SM_b21336 0.60 -0.3 1,003,574 + SM_b21336 0.80 -2.0 1,003,581 - SM_b21336 0.81 -2.2 1,003,637 - SM_b21336 0.87 -0.0 1,004,340 - +0.2 1,004,340 - SM_b21337 0.68 -0.2 1,004,483 - -0.3 1,004,502 - -0.3 1,004,567 + +1.6 1,004,777 - -0.1 1,004,777 - SM_b21338 0.25 +2.0 1,004,860 - SM_b21338 0.34 -0.4 1,004,860 - SM_b21338 0.34 +0.0 1,004,872 + SM_b21338 0.35 +0.0 1,004,919 - SM_b21338 0.41 +0.6 1,005,131 + SM_b21338 0.64 -0.8 1,005,200 - SM_b21338 0.72 -0.4 1,005,261 - SM_b21338 0.78 +1.3
Or see this region's nucleotide sequence