Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21139 and SM_b21140 overlap by 4 nucleotides SM_b21140 and SM_b21216 are separated by 41 nucleotides SM_b21216 and SM_b21217 overlap by 4 nucleotides SM_b21217 and SM_b21218 are separated by 2 nucleotides
SM_b21139: SM_b21139 - translation initiation inhibitors, at 777,447 to 777,830
_b21139
SM_b21140: SM_b21140 - transcriptional regulator, at 777,827 to 778,687
_b21140
SM_b21216: SM_b21216 - ABC transporter for D-Glucosamine, ATPase component <small>(from data)</small>, at 778,729 to 779,811
_b21216
SM_b21217: SM_b21217 - glucosamine kinase (EC 2.7.1.8) <small>(from data)</small>, at 779,808 to 780,743
_b21217
SM_b21218: SM_b21218 - glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) <small>(from data)</small>, at 780,746 to 781,765
_b21218
Position (kb) 778
779
780 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 777.816 kb on + strand at 777.817 kb on - strand at 777.853 kb on + strand at 777.853 kb on + strand at 777.854 kb on - strand at 778.019 kb on + strand, within SM_b21140 at 778.019 kb on + strand, within SM_b21140 at 778.104 kb on - strand, within SM_b21140 at 778.122 kb on - strand, within SM_b21140 at 778.122 kb on - strand, within SM_b21140 at 778.219 kb on + strand, within SM_b21140 at 778.226 kb on + strand, within SM_b21140 at 778.227 kb on - strand, within SM_b21140 at 778.227 kb on - strand, within SM_b21140 at 778.280 kb on - strand, within SM_b21140 at 778.281 kb on + strand, within SM_b21140 at 778.282 kb on - strand, within SM_b21140 at 778.282 kb on - strand, within SM_b21140 at 778.365 kb on + strand, within SM_b21140 at 778.366 kb on - strand, within SM_b21140 at 778.366 kb on - strand, within SM_b21140 at 778.455 kb on - strand, within SM_b21140 at 778.714 kb on - strand at 778.714 kb on - strand at 779.126 kb on + strand, within SM_b21216 at 779.127 kb on - strand, within SM_b21216 at 779.147 kb on + strand, within SM_b21216 at 779.148 kb on - strand, within SM_b21216 at 779.246 kb on + strand, within SM_b21216 at 779.246 kb on + strand, within SM_b21216 at 779.246 kb on + strand, within SM_b21216 at 779.246 kb on + strand, within SM_b21216 at 779.247 kb on - strand, within SM_b21216 at 779.561 kb on + strand, within SM_b21216 at 779.562 kb on - strand, within SM_b21216 at 779.562 kb on - strand, within SM_b21216 at 779.562 kb on - strand, within SM_b21216 at 779.562 kb on - strand, within SM_b21216 at 779.982 kb on - strand, within SM_b21217 at 780.141 kb on - strand, within SM_b21217 at 780.301 kb on + strand, within SM_b21217 at 780.301 kb on + strand, within SM_b21217 at 780.302 kb on - strand, within SM_b21217 at 780.302 kb on - strand, within SM_b21217 at 780.311 kb on + strand, within SM_b21217 at 780.311 kb on + strand, within SM_b21217 at 780.311 kb on + strand, within SM_b21217 at 780.350 kb on - strand, within SM_b21217 at 780.577 kb on + strand, within SM_b21217 at 780.577 kb on + strand, within SM_b21217 at 780.699 kb on + strand at 780.699 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 777,816 + +0.5 777,817 - +0.1 777,853 + -0.6 777,853 + -1.8 777,854 - +0.2 778,019 + SM_b21140 0.22 -0.3 778,019 + SM_b21140 0.22 +1.1 778,104 - SM_b21140 0.32 -0.1 778,122 - SM_b21140 0.34 +1.9 778,122 - SM_b21140 0.34 +0.2 778,219 + SM_b21140 0.46 -3.5 778,226 + SM_b21140 0.46 +0.4 778,227 - SM_b21140 0.46 +0.4 778,227 - SM_b21140 0.46 +0.5 778,280 - SM_b21140 0.53 -1.0 778,281 + SM_b21140 0.53 +1.2 778,282 - SM_b21140 0.53 +0.5 778,282 - SM_b21140 0.53 -1.2 778,365 + SM_b21140 0.62 +1.8 778,366 - SM_b21140 0.63 -2.4 778,366 - SM_b21140 0.63 -0.1 778,455 - SM_b21140 0.73 +0.2 778,714 - -0.3 778,714 - -3.1 779,126 + SM_b21216 0.37 -2.3 779,127 - SM_b21216 0.37 -1.2 779,147 + SM_b21216 0.39 -2.5 779,148 - SM_b21216 0.39 -5.4 779,246 + SM_b21216 0.48 -3.5 779,246 + SM_b21216 0.48 -3.9 779,246 + SM_b21216 0.48 -3.5 779,246 + SM_b21216 0.48 -1.5 779,247 - SM_b21216 0.48 -1.8 779,561 + SM_b21216 0.77 -3.5 779,562 - SM_b21216 0.77 -2.4 779,562 - SM_b21216 0.77 -2.2 779,562 - SM_b21216 0.77 -4.6 779,562 - SM_b21216 0.77 -3.7 779,982 - SM_b21217 0.19 -2.7 780,141 - SM_b21217 0.36 -2.2 780,301 + SM_b21217 0.53 -3.5 780,301 + SM_b21217 0.53 -4.8 780,302 - SM_b21217 0.53 -4.1 780,302 - SM_b21217 0.53 -2.9 780,311 + SM_b21217 0.54 -0.9 780,311 + SM_b21217 0.54 -4.2 780,311 + SM_b21217 0.54 -3.8 780,350 - SM_b21217 0.58 -2.6 780,577 + SM_b21217 0.82 -2.4 780,577 + SM_b21217 0.82 -3.1 780,699 + -2.7 780,699 + -3.2
Or see this region's nucleotide sequence