Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20816 and SM_b20817 are separated by 84 nucleotides SM_b20817 and SM_b20818 are separated by 205 nucleotides
SM_b20816: SM_b20816 - hypothetical protein, at 604,519 to 605,808
_b20816
SM_b20817: SM_b20817 - LacI family transcriptional regulator, at 605,893 to 606,924
_b20817
SM_b20818: SM_b20818 - hydrocarbon oxygenase, at 607,130 to 608,221
_b20818
Position (kb) 605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 605.053 kb on + strand, within SM_b20816 at 605.053 kb on + strand, within SM_b20816 at 605.061 kb on - strand, within SM_b20816 at 605.200 kb on - strand, within SM_b20816 at 605.333 kb on - strand, within SM_b20816 at 605.333 kb on - strand, within SM_b20816 at 605.791 kb on - strand at 605.899 kb on - strand at 605.912 kb on + strand at 605.912 kb on + strand at 605.912 kb on + strand at 605.912 kb on + strand at 605.912 kb on + strand at 605.913 kb on - strand at 605.913 kb on - strand at 605.916 kb on + strand at 605.917 kb on - strand at 605.980 kb on - strand at 605.980 kb on - strand at 605.980 kb on - strand at 606.161 kb on + strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.162 kb on - strand, within SM_b20817 at 606.285 kb on - strand, within SM_b20817 at 606.311 kb on + strand, within SM_b20817 at 606.428 kb on + strand, within SM_b20817 at 606.428 kb on + strand at 606.429 kb on - strand, within SM_b20817 at 606.689 kb on + strand, within SM_b20817 at 606.689 kb on + strand, within SM_b20817 at 606.690 kb on - strand, within SM_b20817 at 606.807 kb on - strand, within SM_b20817 at 607.025 kb on + strand at 607.092 kb on + strand at 607.099 kb on + strand at 607.157 kb on + strand at 607.220 kb on + strand at 607.340 kb on + strand, within SM_b20818 at 607.340 kb on + strand, within SM_b20818 at 607.382 kb on + strand, within SM_b20818 at 607.382 kb on + strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.383 kb on - strand, within SM_b20818 at 607.544 kb on - strand, within SM_b20818 at 607.766 kb on + strand, within SM_b20818 at 607.766 kb on + strand, within SM_b20818 at 607.767 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818 at 607.794 kb on - strand, within SM_b20818
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 605,053 + SM_b20816 0.41 -0.6 605,053 + SM_b20816 0.41 -1.0 605,061 - SM_b20816 0.42 -0.4 605,200 - SM_b20816 0.53 +0.0 605,333 - SM_b20816 0.63 -0.0 605,333 - SM_b20816 0.63 +0.3 605,791 - +3.1 605,899 - -1.1 605,912 + +0.3 605,912 + +0.1 605,912 + +0.0 605,912 + +1.0 605,912 + +0.7 605,913 - -0.8 605,913 - +1.4 605,916 + +0.6 605,917 - +1.5 605,980 - +0.1 605,980 - -0.7 605,980 - -0.0 606,161 + SM_b20817 0.26 -0.8 606,162 - SM_b20817 0.26 +0.5 606,162 - SM_b20817 0.26 -2.9 606,162 - SM_b20817 0.26 +0.4 606,162 - SM_b20817 0.26 -0.8 606,285 - SM_b20817 0.38 +0.1 606,311 + SM_b20817 0.41 +1.4 606,428 + SM_b20817 0.52 +1.5 606,428 + +0.4 606,429 - SM_b20817 0.52 +0.0 606,689 + SM_b20817 0.77 +0.8 606,689 + SM_b20817 0.77 +1.1 606,690 - SM_b20817 0.77 +0.6 606,807 - SM_b20817 0.89 -1.4 607,025 + +1.2 607,092 + -0.5 607,099 + +0.2 607,157 + +0.2 607,220 + -0.8 607,340 + SM_b20818 0.19 +0.7 607,340 + SM_b20818 0.19 -0.4 607,382 + SM_b20818 0.23 -1.6 607,382 + SM_b20818 0.23 -1.3 607,383 - SM_b20818 0.23 +0.0 607,383 - SM_b20818 0.23 -0.3 607,383 - SM_b20818 0.23 -0.3 607,383 - SM_b20818 0.23 +0.8 607,544 - SM_b20818 0.38 -0.2 607,766 + SM_b20818 0.58 -0.3 607,766 + SM_b20818 0.58 -0.0 607,767 - SM_b20818 0.58 -0.4 607,794 - SM_b20818 0.61 -0.7 607,794 - SM_b20818 0.61 +0.6
Or see this region's nucleotide sequence