Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20716 and SM_b20717 are separated by 88 nucleotides SM_b20717 and SM_b20718 are separated by 266 nucleotides
SM_b20716: SM_b20716 - hypothetical protein, at 1,519,556 to 1,520,452
_b20716
SM_b20717: SM_b20717 - LacI family transcriptional regulator, at 1,520,541 to 1,521,566
_b20717
SM_b20718: SM_b20718 - sugar uptake ABC transporter ATP-binding protein, at 1,521,833 to 1,523,359
_b20718
Position (kb)
1520
1521
1522 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1519.667 kb on + strand, within SM_b20716 at 1519.719 kb on + strand, within SM_b20716 at 1519.719 kb on + strand, within SM_b20716 at 1519.896 kb on + strand, within SM_b20716 at 1519.897 kb on - strand, within SM_b20716 at 1519.932 kb on + strand, within SM_b20716 at 1520.042 kb on + strand, within SM_b20716 at 1520.212 kb on + strand, within SM_b20716 at 1520.279 kb on + strand, within SM_b20716 at 1520.279 kb on + strand, within SM_b20716 at 1520.330 kb on + strand, within SM_b20716 at 1520.330 kb on + strand, within SM_b20716 at 1520.331 kb on - strand, within SM_b20716 at 1520.331 kb on - strand, within SM_b20716 at 1520.331 kb on - strand, within SM_b20716 at 1520.348 kb on - strand, within SM_b20716 at 1520.403 kb on + strand at 1520.469 kb on + strand at 1520.490 kb on + strand at 1520.495 kb on + strand at 1520.495 kb on + strand at 1520.495 kb on + strand at 1520.542 kb on + strand at 1520.766 kb on + strand, within SM_b20717 at 1520.767 kb on - strand, within SM_b20717 at 1520.773 kb on + strand, within SM_b20717 at 1520.774 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.981 kb on + strand, within SM_b20717 at 1520.981 kb on + strand, within SM_b20717 at 1520.983 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.326 kb on + strand, within SM_b20717 at 1521.326 kb on + strand, within SM_b20717 at 1521.327 kb on - strand, within SM_b20717 at 1521.418 kb on + strand, within SM_b20717 at 1521.527 kb on + strand at 1521.528 kb on - strand at 1521.590 kb on - strand at 1521.686 kb on + strand at 1521.701 kb on + strand at 1521.701 kb on + strand at 1521.701 kb on + strand at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.205 kb on - strand, within SM_b20718 at 1522.491 kb on + strand, within SM_b20718
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 1,519,667 + SM_b20716 0.12 -0.3 1,519,719 + SM_b20716 0.18 +0.7 1,519,719 + SM_b20716 0.18 +0.9 1,519,896 + SM_b20716 0.38 +0.2 1,519,897 - SM_b20716 0.38 -0.2 1,519,932 + SM_b20716 0.42 +0.3 1,520,042 + SM_b20716 0.54 -0.5 1,520,212 + SM_b20716 0.73 -2.1 1,520,279 + SM_b20716 0.81 -0.1 1,520,279 + SM_b20716 0.81 +0.5 1,520,330 + SM_b20716 0.86 +1.1 1,520,330 + SM_b20716 0.86 +0.1 1,520,331 - SM_b20716 0.86 -1.4 1,520,331 - SM_b20716 0.86 -0.6 1,520,331 - SM_b20716 0.86 +0.2 1,520,348 - SM_b20716 0.88 -3.2 1,520,403 + +0.8 1,520,469 + -1.2 1,520,490 + -0.1 1,520,495 + -0.3 1,520,495 + +0.4 1,520,495 + +1.3 1,520,542 + +1.0 1,520,766 + SM_b20717 0.22 +1.9 1,520,767 - SM_b20717 0.22 +2.7 1,520,773 + SM_b20717 0.23 -0.2 1,520,774 - SM_b20717 0.23 -0.4 1,520,922 - SM_b20717 0.37 -2.3 1,520,922 - SM_b20717 0.37 -2.3 1,520,922 - SM_b20717 0.37 +0.2 1,520,922 - SM_b20717 0.37 -1.7 1,520,922 - SM_b20717 0.37 +1.2 1,520,922 - SM_b20717 0.37 +0.4 1,520,981 + SM_b20717 0.43 +0.2 1,520,981 + SM_b20717 0.43 -0.7 1,520,983 + SM_b20717 0.43 -0.6 1,521,091 + SM_b20717 0.54 -0.4 1,521,091 + SM_b20717 0.54 +3.0 1,521,091 + SM_b20717 0.54 -3.4 1,521,091 + SM_b20717 0.54 +1.0 1,521,091 + SM_b20717 0.54 +0.9 1,521,092 - SM_b20717 0.54 +0.4 1,521,092 - SM_b20717 0.54 +0.7 1,521,092 - SM_b20717 0.54 -0.5 1,521,092 - SM_b20717 0.54 -0.7 1,521,092 - SM_b20717 0.54 +2.1 1,521,326 + SM_b20717 0.77 -0.2 1,521,326 + SM_b20717 0.77 +2.0 1,521,327 - SM_b20717 0.77 +1.6 1,521,418 + SM_b20717 0.85 -1.3 1,521,527 + +2.4 1,521,528 - -0.7 1,521,590 - +0.1 1,521,686 + -0.4 1,521,701 + +0.7 1,521,701 + +1.0 1,521,701 + +0.1 1,522,202 + SM_b20718 0.24 +1.2 1,522,202 + SM_b20718 0.24 -1.4 1,522,202 + SM_b20718 0.24 +0.6 1,522,202 + SM_b20718 0.24 +0.9 1,522,202 + SM_b20718 0.24 +0.6 1,522,203 - SM_b20718 0.24 +0.9 1,522,203 - SM_b20718 0.24 +1.6 1,522,203 - SM_b20718 0.24 +0.8 1,522,203 - SM_b20718 0.24 -0.6 1,522,204 + SM_b20718 0.24 -0.4 1,522,204 + SM_b20718 0.24 -2.0 1,522,204 + SM_b20718 0.24 -0.1 1,522,205 - SM_b20718 0.24 +0.9 1,522,491 + SM_b20718 0.43 -0.2
Or see this region's nucleotide sequence