Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20689

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20687 and SM_b20688 are separated by 1 nucleotidesSM_b20688 and SM_b20689 are separated by 7 nucleotidesSM_b20689 and SM_b20690 overlap by 4 nucleotidesSM_b20690 and SM_b20691 are separated by 51 nucleotidesSM_b20691 and SM_b20692 are separated by 309 nucleotides SM_b20687: SM_b20687 - hypothetical protein, at 1,490,711 to 1,491,796 _b20687 SM_b20688: SM_b20688 - hypothetical protein, at 1,491,798 to 1,492,439 _b20688 SM_b20689: SM_b20689 - exodeoxyribonuclease III protein, at 1,492,447 to 1,493,220 _b20689 SM_b20690: SM_b20690 - hypothetical protein, at 1,493,217 to 1,493,543 _b20690 SM_b20691: SM_b20691 - hypothetical protein, at 1,493,595 to 1,493,816 _b20691 SM_b20692: SM_b20692 - 5-keto-D-gluconate 5-reductase, at 1,494,126 to 1,494,932 _b20692 Position (kb) 1492 1493 1494Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1491.489 kb on - strand, within SM_b20687at 1491.489 kb on - strand, within SM_b20687at 1491.702 kb on - strandat 1491.702 kb on - strandat 1491.954 kb on + strand, within SM_b20688at 1491.954 kb on + strand, within SM_b20688at 1491.957 kb on - strand, within SM_b20688at 1491.957 kb on - strand, within SM_b20688at 1492.018 kb on + strand, within SM_b20688at 1492.023 kb on + strand, within SM_b20688at 1492.211 kb on + strand, within SM_b20688at 1492.309 kb on - strand, within SM_b20688at 1492.600 kb on + strand, within SM_b20689at 1492.708 kb on - strand, within SM_b20689at 1492.763 kb on - strand, within SM_b20689at 1492.918 kb on + strand, within SM_b20689at 1492.918 kb on + strand, within SM_b20689at 1492.919 kb on - strand, within SM_b20689at 1492.933 kb on + strand, within SM_b20689at 1492.934 kb on - strand, within SM_b20689at 1493.198 kb on + strandat 1493.198 kb on + strandat 1493.219 kb on - strandat 1493.219 kb on - strandat 1493.219 kb on - strandat 1493.325 kb on + strand, within SM_b20690at 1493.498 kb on + strand, within SM_b20690at 1493.548 kb on + strandat 1493.549 kb on - strandat 1493.549 kb on - strandat 1493.549 kb on - strandat 1493.597 kb on - strandat 1493.762 kb on + strand, within SM_b20691at 1493.764 kb on + strand, within SM_b20691at 1493.764 kb on + strand, within SM_b20691at 1493.942 kb on + strandat 1493.942 kb on + strandat 1493.943 kb on - strandat 1494.157 kb on + strandat 1494.157 kb on + strandat 1494.157 kb on + strandat 1494.162 kb on + strandat 1494.162 kb on + strandat 1494.163 kb on - strandat 1494.163 kb on - strandat 1494.163 kb on - strandat 1494.163 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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1,491,489 - SM_b20687 0.72 -0.0
1,491,489 - SM_b20687 0.72 -0.7
1,491,702 - -2.2
1,491,702 - +0.1
1,491,954 + SM_b20688 0.24 -0.3
1,491,954 + SM_b20688 0.24 -3.5
1,491,957 - SM_b20688 0.25 -4.0
1,491,957 - SM_b20688 0.25 -0.2
1,492,018 + SM_b20688 0.34 +0.0
1,492,023 + SM_b20688 0.35 -0.2
1,492,211 + SM_b20688 0.64 -1.3
1,492,309 - SM_b20688 0.80 +0.1
1,492,600 + SM_b20689 0.20 +0.9
1,492,708 - SM_b20689 0.34 -1.4
1,492,763 - SM_b20689 0.41 -2.1
1,492,918 + SM_b20689 0.61 +0.3
1,492,918 + SM_b20689 0.61 +0.2
1,492,919 - SM_b20689 0.61 -0.4
1,492,933 + SM_b20689 0.63 -0.4
1,492,934 - SM_b20689 0.63 -0.6
1,493,198 + +0.8
1,493,198 + -0.0
1,493,219 - +0.6
1,493,219 - -2.4
1,493,219 - +0.2
1,493,325 + SM_b20690 0.33 -1.7
1,493,498 + SM_b20690 0.86 +0.9
1,493,548 + -1.5
1,493,549 - +0.7
1,493,549 - -2.7
1,493,549 - +0.0
1,493,597 - -1.1
1,493,762 + SM_b20691 0.75 +1.0
1,493,764 + SM_b20691 0.76 -0.6
1,493,764 + SM_b20691 0.76 -1.2
1,493,942 + -0.3
1,493,942 + +1.6
1,493,943 - +0.7
1,494,157 + +0.6
1,494,157 + +0.1
1,494,157 + +0.6
1,494,162 + +0.4
1,494,162 + +1.5
1,494,163 - +0.6
1,494,163 - +0.4
1,494,163 - +0.4
1,494,163 - +1.8

Or see this region's nucleotide sequence