Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20633

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20631 and SM_b20632 are separated by 19 nucleotidesSM_b20632 and SM_b20633 overlap by 4 nucleotidesSM_b20633 and SM_b20634 are separated by 190 nucleotides SM_b20631: SM_b20631 - hypothetical protein, at 1,650,017 to 1,651,939 _b20631 SM_b20632: SM_b20632 - sugar uptake ABC transporter permease, at 1,651,959 to 1,652,822 _b20632 SM_b20633: SM_b20633 - sugar uptake ABC transporter permease, at 1,652,819 to 1,653,736 _b20633 SM_b20634: SM_b20634 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,653,927 to 1,655,162 _b20634 Position (kb) 1652 1653 1654Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1651.994 kb on - strandat 1651.994 kb on - strandat 1652.126 kb on - strand, within SM_b20632at 1652.359 kb on + strand, within SM_b20632at 1652.360 kb on - strand, within SM_b20632at 1652.360 kb on - strand, within SM_b20632at 1652.952 kb on + strand, within SM_b20633at 1652.952 kb on + strand, within SM_b20633at 1652.953 kb on - strand, within SM_b20633at 1653.003 kb on + strand, within SM_b20633at 1653.003 kb on + strand, within SM_b20633at 1653.004 kb on - strand, within SM_b20633at 1653.238 kb on + strand, within SM_b20633at 1653.287 kb on - strand, within SM_b20633at 1653.479 kb on - strand, within SM_b20633at 1653.481 kb on - strand, within SM_b20633at 1653.537 kb on + strand, within SM_b20633at 1653.537 kb on + strand, within SM_b20633at 1653.537 kb on + strand, within SM_b20633at 1653.537 kb on + strand, within SM_b20633at 1653.537 kb on + strand, within SM_b20633at 1653.538 kb on - strand, within SM_b20633at 1653.538 kb on - strand, within SM_b20633at 1653.658 kb on + strandat 1653.659 kb on - strandat 1653.660 kb on + strandat 1653.660 kb on + strandat 1653.660 kb on + strandat 1653.661 kb on - strandat 1653.795 kb on + strandat 1653.795 kb on + strandat 1654.001 kb on - strandat 1654.070 kb on + strand, within SM_b20634at 1654.070 kb on + strand, within SM_b20634at 1654.070 kb on + strand, within SM_b20634at 1654.071 kb on - strand, within SM_b20634at 1654.073 kb on - strand, within SM_b20634at 1654.210 kb on + strand, within SM_b20634at 1654.210 kb on + strand, within SM_b20634at 1654.211 kb on - strand, within SM_b20634at 1654.214 kb on + strand, within SM_b20634at 1654.214 kb on + strand, within SM_b20634at 1654.214 kb on + strand, within SM_b20634at 1654.215 kb on - strand, within SM_b20634at 1654.215 kb on - strand, within SM_b20634at 1654.215 kb on - strand, within SM_b20634at 1654.215 kb on - strand, within SM_b20634at 1654.215 kb on - strand, within SM_b20634at 1654.216 kb on + strand, within SM_b20634at 1654.217 kb on - strand, within SM_b20634at 1654.217 kb on - strand, within SM_b20634at 1654.217 kb on - strand, within SM_b20634at 1654.369 kb on - strand, within SM_b20634at 1654.517 kb on + strand, within SM_b20634at 1654.628 kb on - strand, within SM_b20634at 1654.628 kb on - strand, within SM_b20634at 1654.628 kb on - strand, within SM_b20634at 1654.636 kb on + strand, within SM_b20634at 1654.733 kb on - strand, within SM_b20634

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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1,651,994 - -2.7
1,651,994 - +0.4
1,652,126 - SM_b20632 0.19 -4.9
1,652,359 + SM_b20632 0.46 -0.2
1,652,360 - SM_b20632 0.46 +0.1
1,652,360 - SM_b20632 0.46 -0.8
1,652,952 + SM_b20633 0.14 -0.3
1,652,952 + SM_b20633 0.14 -2.6
1,652,953 - SM_b20633 0.15 -0.7
1,653,003 + SM_b20633 0.20 -0.2
1,653,003 + SM_b20633 0.20 +0.5
1,653,004 - SM_b20633 0.20 -3.0
1,653,238 + SM_b20633 0.46 -0.6
1,653,287 - SM_b20633 0.51 +1.4
1,653,479 - SM_b20633 0.72 -2.4
1,653,481 - SM_b20633 0.72 +0.0
1,653,537 + SM_b20633 0.78 -0.1
1,653,537 + SM_b20633 0.78 +0.1
1,653,537 + SM_b20633 0.78 -2.5
1,653,537 + SM_b20633 0.78 +0.5
1,653,537 + SM_b20633 0.78 -0.3
1,653,538 - SM_b20633 0.78 -3.2
1,653,538 - SM_b20633 0.78 -0.3
1,653,658 + -0.6
1,653,659 - -1.2
1,653,660 + -0.1
1,653,660 + +1.0
1,653,660 + -0.3
1,653,661 - +0.2
1,653,795 + -0.1
1,653,795 + -0.9
1,654,001 - +0.0
1,654,070 + SM_b20634 0.12 +1.5
1,654,070 + SM_b20634 0.12 -0.3
1,654,070 + SM_b20634 0.12 -2.9
1,654,071 - SM_b20634 0.12 -3.2
1,654,073 - SM_b20634 0.12 -3.7
1,654,210 + SM_b20634 0.23 +0.0
1,654,210 + SM_b20634 0.23 +0.8
1,654,211 - SM_b20634 0.23 +0.1
1,654,214 + SM_b20634 0.23 +0.1
1,654,214 + SM_b20634 0.23 -0.6
1,654,214 + SM_b20634 0.23 +0.3
1,654,215 - SM_b20634 0.23 -0.0
1,654,215 - SM_b20634 0.23 +0.5
1,654,215 - SM_b20634 0.23 -2.2
1,654,215 - SM_b20634 0.23 +0.1
1,654,215 - SM_b20634 0.23 -0.9
1,654,216 + SM_b20634 0.23 -1.2
1,654,217 - SM_b20634 0.23 +3.7
1,654,217 - SM_b20634 0.23 +0.1
1,654,217 - SM_b20634 0.23 -0.4
1,654,369 - SM_b20634 0.36 +0.2
1,654,517 + SM_b20634 0.48 -0.2
1,654,628 - SM_b20634 0.57 -0.1
1,654,628 - SM_b20634 0.57 +1.6
1,654,628 - SM_b20634 0.57 +0.7
1,654,636 + SM_b20634 0.57 +0.1
1,654,733 - SM_b20634 0.65 +0.1

Or see this region's nucleotide sequence