Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20499

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20497 and SM_b20498 are separated by 30 nucleotidesSM_b20498 and SM_b20499 are separated by 66 nucleotidesSM_b20499 and SM_b20500 are separated by 11 nucleotides SM_b20497: SM_b20497 - L-xylulose kinase, at 516,973 to 518,502 _b20497 SM_b20498: SM_b20498 - hypothetical protein, at 518,533 to 519,375 _b20498 SM_b20499: SM_b20499 - glycerol-3-phosphate dehydrogenase, at 519,442 to 521,175 _b20499 SM_b20500: SM_b20500 - aldoketo reductase, at 521,187 to 522,182 _b20500 Position (kb) 519 520 521 522Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 518.488 kb on + strandat 518.492 kb on + strandat 518.492 kb on + strandat 518.492 kb on + strandat 518.493 kb on - strandat 518.493 kb on - strandat 518.493 kb on - strandat 518.547 kb on - strandat 518.633 kb on + strand, within SM_b20498at 518.633 kb on + strand, within SM_b20498at 518.648 kb on + strand, within SM_b20498at 518.648 kb on + strand, within SM_b20498at 518.648 kb on + strand, within SM_b20498at 518.876 kb on + strand, within SM_b20498at 518.876 kb on + strand, within SM_b20498at 518.877 kb on - strand, within SM_b20498at 518.918 kb on - strand, within SM_b20498at 518.936 kb on + strand, within SM_b20498at 518.936 kb on + strand, within SM_b20498at 518.936 kb on + strand, within SM_b20498at 518.936 kb on + strand, within SM_b20498at 519.119 kb on + strand, within SM_b20498at 519.120 kb on - strand, within SM_b20498at 519.363 kb on + strandat 519.364 kb on - strandat 519.377 kb on + strandat 519.378 kb on + strandat 519.379 kb on - strandat 519.379 kb on - strandat 519.462 kb on + strandat 519.723 kb on + strand, within SM_b20499at 519.724 kb on - strand, within SM_b20499at 519.763 kb on + strand, within SM_b20499at 519.764 kb on - strand, within SM_b20499at 520.019 kb on - strand, within SM_b20499at 520.124 kb on + strand, within SM_b20499at 520.125 kb on - strand, within SM_b20499at 520.187 kb on + strand, within SM_b20499at 520.188 kb on - strand, within SM_b20499at 520.188 kb on - strand, within SM_b20499at 520.188 kb on - strand, within SM_b20499at 520.311 kb on - strand, within SM_b20499at 520.313 kb on + strand, within SM_b20499at 520.516 kb on + strand, within SM_b20499at 520.516 kb on + strand, within SM_b20499at 520.517 kb on - strand, within SM_b20499at 520.517 kb on - strand, within SM_b20499at 520.517 kb on - strand, within SM_b20499at 520.517 kb on - strand, within SM_b20499at 520.517 kb on - strand, within SM_b20499at 520.520 kb on + strand, within SM_b20499at 520.520 kb on + strand, within SM_b20499at 520.520 kb on + strand, within SM_b20499at 520.520 kb on + strand, within SM_b20499at 520.521 kb on - strand, within SM_b20499at 520.521 kb on - strand, within SM_b20499at 520.553 kb on + strand, within SM_b20499at 520.553 kb on + strand, within SM_b20499at 520.554 kb on - strand, within SM_b20499at 520.554 kb on - strand, within SM_b20499at 520.643 kb on + strand, within SM_b20499at 520.644 kb on - strand, within SM_b20499at 520.646 kb on + strand, within SM_b20499at 520.646 kb on + strand, within SM_b20499at 520.646 kb on + strand, within SM_b20499at 520.646 kb on + strand, within SM_b20499at 520.647 kb on - strand, within SM_b20499at 520.761 kb on - strand, within SM_b20499at 520.761 kb on - strand, within SM_b20499at 520.858 kb on + strand, within SM_b20499at 520.858 kb on + strand, within SM_b20499at 520.859 kb on - strand, within SM_b20499at 520.957 kb on - strand, within SM_b20499at 520.976 kb on + strand, within SM_b20499at 520.977 kb on - strand, within SM_b20499at 520.977 kb on - strand, within SM_b20499at 520.977 kb on - strand, within SM_b20499at 521.188 kb on + strandat 521.381 kb on - strand, within SM_b20500at 521.381 kb on - strand, within SM_b20500at 521.381 kb on - strand, within SM_b20500at 521.381 kb on - strand, within SM_b20500at 521.650 kb on + strand, within SM_b20500at 521.651 kb on - strand, within SM_b20500at 521.651 kb on - strand, within SM_b20500at 521.779 kb on + strand, within SM_b20500at 521.779 kb on + strand, within SM_b20500at 521.780 kb on - strand, within SM_b20500at 521.780 kb on - strand, within SM_b20500at 521.790 kb on - strand, within SM_b20500at 521.790 kb on - strand, within SM_b20500at 521.791 kb on + strand, within SM_b20500at 521.791 kb on + strand, within SM_b20500at 521.792 kb on - strand, within SM_b20500at 521.792 kb on - strand, within SM_b20500at 521.792 kb on - strand, within SM_b20500

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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518,488 + -0.2
518,492 + -0.0
518,492 + +1.0
518,492 + -0.3
518,493 - -0.2
518,493 - +0.4
518,493 - +0.1
518,547 - +0.4
518,633 + SM_b20498 0.12 +1.9
518,633 + SM_b20498 0.12 +0.9
518,648 + SM_b20498 0.14 -2.3
518,648 + SM_b20498 0.14 +0.5
518,648 + SM_b20498 0.14 +1.2
518,876 + SM_b20498 0.41 -0.1
518,876 + SM_b20498 0.41 -2.1
518,877 - SM_b20498 0.41 +0.6
518,918 - SM_b20498 0.46 -1.3
518,936 + SM_b20498 0.48 +0.9
518,936 + SM_b20498 0.48 -0.5
518,936 + SM_b20498 0.48 -0.1
518,936 + SM_b20498 0.48 +0.0
519,119 + SM_b20498 0.70 -0.6
519,120 - SM_b20498 0.70 +0.0
519,363 + +0.8
519,364 - -1.1
519,377 + +0.4
519,378 + +0.1
519,379 - +0.3
519,379 - -1.7
519,462 + -0.3
519,723 + SM_b20499 0.16 +0.2
519,724 - SM_b20499 0.16 -2.1
519,763 + SM_b20499 0.19 -2.3
519,764 - SM_b20499 0.19 +0.1
520,019 - SM_b20499 0.33 -0.6
520,124 + SM_b20499 0.39 -0.6
520,125 - SM_b20499 0.39 +1.2
520,187 + SM_b20499 0.43 +0.4
520,188 - SM_b20499 0.43 -1.6
520,188 - SM_b20499 0.43 -4.3
520,188 - SM_b20499 0.43 -0.1
520,311 - SM_b20499 0.50 +1.5
520,313 + SM_b20499 0.50 +1.8
520,516 + SM_b20499 0.62 -0.1
520,516 + SM_b20499 0.62 -0.2
520,517 - SM_b20499 0.62 -1.3
520,517 - SM_b20499 0.62 -0.6
520,517 - SM_b20499 0.62 -0.5
520,517 - SM_b20499 0.62 -0.3
520,517 - SM_b20499 0.62 -1.2
520,520 + SM_b20499 0.62 +0.1
520,520 + SM_b20499 0.62 +0.9
520,520 + SM_b20499 0.62 +0.7
520,520 + SM_b20499 0.62 -2.3
520,521 - SM_b20499 0.62 -2.4
520,521 - SM_b20499 0.62 -0.3
520,553 + SM_b20499 0.64 -1.3
520,553 + SM_b20499 0.64 -0.0
520,554 - SM_b20499 0.64 -0.6
520,554 - SM_b20499 0.64 -0.1
520,643 + SM_b20499 0.69 +0.7
520,644 - SM_b20499 0.69 -0.5
520,646 + SM_b20499 0.69 +0.5
520,646 + SM_b20499 0.69 -1.7
520,646 + SM_b20499 0.69 +1.0
520,646 + SM_b20499 0.69 +0.2
520,647 - SM_b20499 0.69 +0.8
520,761 - SM_b20499 0.76 +0.3
520,761 - SM_b20499 0.76 -2.7
520,858 + SM_b20499 0.82 -0.3
520,858 + SM_b20499 0.82 +0.2
520,859 - SM_b20499 0.82 -0.9
520,957 - SM_b20499 0.87 +0.5
520,976 + SM_b20499 0.88 +0.2
520,977 - SM_b20499 0.89 -0.3
520,977 - SM_b20499 0.89 -2.5
520,977 - SM_b20499 0.89 +0.1
521,188 + -0.3
521,381 - SM_b20500 0.19 +0.7
521,381 - SM_b20500 0.19 -1.7
521,381 - SM_b20500 0.19 -1.7
521,381 - SM_b20500 0.19 +0.7
521,650 + SM_b20500 0.46 -0.4
521,651 - SM_b20500 0.47 +0.0
521,651 - SM_b20500 0.47 +0.2
521,779 + SM_b20500 0.59 +0.2
521,779 + SM_b20500 0.59 +0.3
521,780 - SM_b20500 0.60 -0.3
521,780 - SM_b20500 0.60 +0.0
521,790 - SM_b20500 0.61 -1.2
521,790 - SM_b20500 0.61 -0.3
521,791 + SM_b20500 0.61 -0.9
521,791 + SM_b20500 0.61 -0.3
521,792 - SM_b20500 0.61 +1.4
521,792 - SM_b20500 0.61 -0.6
521,792 - SM_b20500 0.61 +1.7

Or see this region's nucleotide sequence