Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20485 and SM_b20486 overlap by 8 nucleotides SM_b20486 and SM_b20487 overlap by 4 nucleotides SM_b20487 and SM_b20488 are separated by 2 nucleotides SM_b20488 and SM_b20489 are separated by 44 nucleotides
SM_b20485: SM_b20485 - sugar ABC transporter ATP-binding protein, at 500,933 to 502,462
_b20485
SM_b20486: SM_b20486 - sugar ABC transporter permease, at 502,455 to 503,456
_b20486
SM_b20487: SM_b20487 - sugar ABC transporter permease, at 503,453 to 504,451
_b20487
SM_b20488: SM_b20488 - hypothetical protein, at 504,454 to 505,302
_b20488
SM_b20489: SM_b20489 - carbohydrate kinase, at 505,347 to 506,819
_b20489
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 502.454 kb on + strand at 502.454 kb on + strand at 502.455 kb on - strand at 502.460 kb on + strand at 502.460 kb on + strand at 502.460 kb on + strand at 502.515 kb on - strand at 502.650 kb on - strand, within SM_b20486 at 502.684 kb on - strand, within SM_b20486 at 502.842 kb on - strand, within SM_b20486 at 502.845 kb on + strand, within SM_b20486 at 502.845 kb on + strand, within SM_b20486 at 502.846 kb on - strand at 502.887 kb on + strand, within SM_b20486 at 502.950 kb on - strand, within SM_b20486 at 502.950 kb on - strand, within SM_b20486 at 502.950 kb on - strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.046 kb on + strand, within SM_b20486 at 503.094 kb on - strand, within SM_b20486 at 503.169 kb on + strand, within SM_b20486 at 503.170 kb on - strand, within SM_b20486 at 503.170 kb on - strand, within SM_b20486 at 504.050 kb on + strand, within SM_b20487 at 504.050 kb on + strand, within SM_b20487 at 504.051 kb on - strand, within SM_b20487 at 504.051 kb on - strand, within SM_b20487 at 504.051 kb on - strand, within SM_b20487 at 504.051 kb on - strand, within SM_b20487 at 504.053 kb on - strand, within SM_b20487 at 504.053 kb on - strand, within SM_b20487 at 504.053 kb on - strand, within SM_b20487 at 504.123 kb on - strand, within SM_b20487 at 504.210 kb on - strand, within SM_b20487 at 504.210 kb on - strand, within SM_b20487 at 504.475 kb on - strand at 504.475 kb on - strand at 504.475 kb on - strand at 504.475 kb on - strand at 504.475 kb on - strand at 504.475 kb on - strand at 504.541 kb on + strand, within SM_b20488 at 504.541 kb on + strand, within SM_b20488 at 504.541 kb on + strand, within SM_b20488 at 504.542 kb on - strand, within SM_b20488 at 504.542 kb on - strand, within SM_b20488 at 504.763 kb on + strand, within SM_b20488 at 504.763 kb on + strand, within SM_b20488 at 504.763 kb on + strand, within SM_b20488 at 504.764 kb on - strand, within SM_b20488 at 504.812 kb on - strand, within SM_b20488 at 504.819 kb on + strand, within SM_b20488 at 504.985 kb on - strand, within SM_b20488 at 504.988 kb on + strand, within SM_b20488 at 504.988 kb on + strand, within SM_b20488 at 504.988 kb on + strand, within SM_b20488 at 504.989 kb on - strand, within SM_b20488 at 505.026 kb on + strand, within SM_b20488 at 505.055 kb on - strand, within SM_b20488 at 505.198 kb on + strand, within SM_b20488 at 505.199 kb on - strand, within SM_b20488 at 505.199 kb on - strand, within SM_b20488
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 502,454 + +1.9 502,454 + +0.2 502,455 - -0.0 502,460 + -2.8 502,460 + +0.2 502,460 + -0.4 502,515 - +2.8 502,650 - SM_b20486 0.19 +0.7 502,684 - SM_b20486 0.23 -0.2 502,842 - SM_b20486 0.39 -0.2 502,845 + SM_b20486 0.39 +1.2 502,845 + SM_b20486 0.39 +0.1 502,846 - -0.8 502,887 + SM_b20486 0.43 -1.6 502,950 - SM_b20486 0.49 +0.1 502,950 - SM_b20486 0.49 -0.4 502,950 - SM_b20486 0.49 -0.6 503,046 + SM_b20486 0.59 -3.3 503,046 + SM_b20486 0.59 -0.3 503,046 + SM_b20486 0.59 +0.3 503,046 + SM_b20486 0.59 +0.9 503,094 - SM_b20486 0.64 +0.3 503,169 + SM_b20486 0.71 +0.3 503,170 - SM_b20486 0.71 +0.2 503,170 - SM_b20486 0.71 +0.7 504,050 + SM_b20487 0.60 -0.2 504,050 + SM_b20487 0.60 +0.3 504,051 - SM_b20487 0.60 +0.3 504,051 - SM_b20487 0.60 -0.1 504,051 - SM_b20487 0.60 -2.8 504,051 - SM_b20487 0.60 -2.8 504,053 - SM_b20487 0.60 -0.7 504,053 - SM_b20487 0.60 -0.3 504,053 - SM_b20487 0.60 -1.9 504,123 - SM_b20487 0.67 -0.1 504,210 - SM_b20487 0.76 -0.1 504,210 - SM_b20487 0.76 +0.0 504,475 - -0.5 504,475 - -2.7 504,475 - +0.6 504,475 - -0.8 504,475 - +0.3 504,475 - -0.5 504,541 + SM_b20488 0.10 +1.5 504,541 + SM_b20488 0.10 +0.5 504,541 + SM_b20488 0.10 -0.1 504,542 - SM_b20488 0.10 +0.9 504,542 - SM_b20488 0.10 -0.2 504,763 + SM_b20488 0.36 +1.6 504,763 + SM_b20488 0.36 +1.0 504,763 + SM_b20488 0.36 -0.0 504,764 - SM_b20488 0.37 -0.5 504,812 - SM_b20488 0.42 -1.7 504,819 + SM_b20488 0.43 +0.7 504,985 - SM_b20488 0.63 +1.2 504,988 + SM_b20488 0.63 +0.2 504,988 + SM_b20488 0.63 +0.3 504,988 + SM_b20488 0.63 +0.3 504,989 - SM_b20488 0.63 +1.0 505,026 + SM_b20488 0.67 +0.5 505,055 - SM_b20488 0.71 +1.4 505,198 + SM_b20488 0.88 -0.5 505,199 - SM_b20488 0.88 -3.5 505,199 - SM_b20488 0.88 +1.8
Or see this region's nucleotide sequence