Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20458 and SM_b20459 overlap by 1 nucleotides SM_b20459 and SM_b20460 overlap by 4 nucleotides SM_b20460 and SM_b20461 are separated by 10 nucleotides SM_b20461 and SM_b20462 overlap by 4 nucleotides
SM_b20458: SM_b20458 - dTDP-glucose 4,6-dehydratase, at 470,412 to 471,458
_b20458
SM_b20459: SM_b20459 - UDP-glucose 4-epimerase, at 471,458 to 472,444
_b20459
SM_b20460: SM_b20460 - cellulose synthase, at 472,441 to 474,306
_b20460
SM_b20461: SM_b20461 - hypothetical protein, at 474,317 to 474,925
_b20461
SM_b20462: SM_b20462 - cellulase H protein, at 474,922 to 475,899
_b20462
Position (kb) 472
473
474
475 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 471.473 kb on - strand at 471.473 kb on - strand at 471.498 kb on - strand at 471.554 kb on + strand at 471.555 kb on - strand at 471.616 kb on + strand, within SM_b20459 at 471.617 kb on - strand, within SM_b20459 at 471.617 kb on - strand, within SM_b20459 at 471.732 kb on - strand, within SM_b20459 at 471.824 kb on + strand at 471.824 kb on + strand, within SM_b20459 at 471.824 kb on + strand, within SM_b20459 at 471.824 kb on + strand, within SM_b20459 at 471.824 kb on + strand, within SM_b20459 at 471.824 kb on + strand, within SM_b20459 at 471.824 kb on + strand, within SM_b20459 at 471.825 kb on - strand, within SM_b20459 at 471.825 kb on - strand, within SM_b20459 at 471.825 kb on - strand, within SM_b20459 at 471.884 kb on + strand, within SM_b20459 at 471.884 kb on + strand, within SM_b20459 at 471.890 kb on - strand, within SM_b20459 at 471.890 kb on - strand, within SM_b20459 at 471.890 kb on - strand, within SM_b20459 at 471.890 kb on - strand, within SM_b20459 at 471.926 kb on + strand, within SM_b20459 at 471.927 kb on - strand, within SM_b20459 at 471.965 kb on + strand, within SM_b20459 at 472.123 kb on - strand, within SM_b20459 at 472.130 kb on + strand, within SM_b20459 at 472.131 kb on - strand, within SM_b20459 at 472.131 kb on - strand, within SM_b20459 at 472.132 kb on + strand, within SM_b20459 at 472.133 kb on - strand, within SM_b20459 at 472.133 kb on - strand at 472.133 kb on - strand, within SM_b20459 at 472.239 kb on + strand, within SM_b20459 at 472.239 kb on + strand, within SM_b20459 at 472.270 kb on + strand, within SM_b20459 at 472.627 kb on - strand at 472.627 kb on - strand at 472.627 kb on - strand at 472.672 kb on + strand, within SM_b20460 at 472.673 kb on - strand, within SM_b20460 at 472.871 kb on + strand, within SM_b20460 at 472.871 kb on + strand, within SM_b20460 at 472.872 kb on - strand, within SM_b20460 at 472.872 kb on - strand, within SM_b20460 at 472.927 kb on + strand, within SM_b20460 at 472.927 kb on + strand, within SM_b20460 at 472.928 kb on - strand, within SM_b20460 at 472.928 kb on - strand, within SM_b20460 at 472.928 kb on - strand, within SM_b20460 at 472.928 kb on - strand, within SM_b20460 at 472.987 kb on + strand, within SM_b20460 at 472.987 kb on + strand, within SM_b20460 at 472.988 kb on - strand, within SM_b20460 at 472.997 kb on - strand, within SM_b20460 at 473.002 kb on + strand, within SM_b20460 at 473.104 kb on + strand, within SM_b20460 at 473.104 kb on + strand, within SM_b20460 at 473.105 kb on - strand, within SM_b20460 at 473.105 kb on - strand, within SM_b20460 at 473.171 kb on - strand, within SM_b20460 at 473.210 kb on - strand, within SM_b20460 at 473.236 kb on - strand, within SM_b20460 at 473.249 kb on - strand, within SM_b20460 at 473.437 kb on - strand, within SM_b20460 at 473.461 kb on + strand, within SM_b20460 at 473.461 kb on + strand, within SM_b20460 at 473.461 kb on + strand, within SM_b20460 at 473.462 kb on - strand, within SM_b20460 at 473.462 kb on - strand, within SM_b20460 at 473.462 kb on - strand, within SM_b20460 at 473.617 kb on + strand, within SM_b20460 at 473.635 kb on + strand, within SM_b20460 at 473.669 kb on + strand, within SM_b20460 at 473.674 kb on + strand, within SM_b20460 at 473.675 kb on - strand, within SM_b20460 at 473.779 kb on - strand, within SM_b20460 at 473.959 kb on + strand, within SM_b20460 at 473.959 kb on + strand, within SM_b20460 at 473.959 kb on + strand, within SM_b20460 at 473.959 kb on + strand, within SM_b20460 at 473.960 kb on - strand, within SM_b20460 at 473.960 kb on - strand, within SM_b20460 at 474.193 kb on + strand at 474.193 kb on + strand at 474.194 kb on - strand at 474.240 kb on - strand at 474.294 kb on - strand at 474.305 kb on - strand at 474.305 kb on - strand at 474.305 kb on - strand at 474.305 kb on - strand at 474.485 kb on + strand, within SM_b20461 at 474.485 kb on + strand, within SM_b20461 at 474.485 kb on + strand, within SM_b20461 at 474.486 kb on - strand, within SM_b20461 at 474.486 kb on - strand, within SM_b20461 at 474.486 kb on - strand, within SM_b20461 at 474.486 kb on - strand, within SM_b20461 at 474.720 kb on - strand, within SM_b20461 at 474.720 kb on - strand, within SM_b20461 at 474.749 kb on + strand, within SM_b20461 at 474.750 kb on - strand, within SM_b20461 at 474.877 kb on + strand at 474.877 kb on + strand at 474.946 kb on - strand at 475.093 kb on + strand, within SM_b20462 at 475.198 kb on + strand, within SM_b20462 at 475.199 kb on - strand, within SM_b20462
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 471,473 - -1.6 471,473 - -0.9 471,498 - -0.2 471,554 + -0.5 471,555 - -0.1 471,616 + SM_b20459 0.16 +1.1 471,617 - SM_b20459 0.16 -0.7 471,617 - SM_b20459 0.16 -0.6 471,732 - SM_b20459 0.28 -1.9 471,824 + +2.5 471,824 + SM_b20459 0.37 -0.1 471,824 + SM_b20459 0.37 +0.6 471,824 + SM_b20459 0.37 -0.5 471,824 + SM_b20459 0.37 -0.4 471,824 + SM_b20459 0.37 -2.1 471,824 + SM_b20459 0.37 -0.9 471,825 - SM_b20459 0.37 -2.9 471,825 - SM_b20459 0.37 -0.0 471,825 - SM_b20459 0.37 -1.1 471,884 + SM_b20459 0.43 +0.1 471,884 + SM_b20459 0.43 -2.3 471,890 - SM_b20459 0.44 -0.1 471,890 - SM_b20459 0.44 +0.6 471,890 - SM_b20459 0.44 +1.3 471,890 - SM_b20459 0.44 -0.6 471,926 + SM_b20459 0.47 -3.8 471,927 - SM_b20459 0.48 +0.2 471,965 + SM_b20459 0.51 -1.4 472,123 - SM_b20459 0.67 -0.3 472,130 + SM_b20459 0.68 -0.5 472,131 - SM_b20459 0.68 +0.1 472,131 - SM_b20459 0.68 -0.4 472,132 + SM_b20459 0.68 -0.2 472,133 - SM_b20459 0.68 +0.2 472,133 - -0.3 472,133 - SM_b20459 0.68 -0.0 472,239 + SM_b20459 0.79 +0.1 472,239 + SM_b20459 0.79 -1.7 472,270 + SM_b20459 0.82 -3.2 472,627 - -0.5 472,627 - -0.3 472,627 - +0.2 472,672 + SM_b20460 0.12 -0.3 472,673 - SM_b20460 0.12 -1.2 472,871 + SM_b20460 0.23 +0.8 472,871 + SM_b20460 0.23 -0.0 472,872 - SM_b20460 0.23 +0.1 472,872 - SM_b20460 0.23 +0.4 472,927 + SM_b20460 0.26 +1.2 472,927 + SM_b20460 0.26 -0.3 472,928 - SM_b20460 0.26 -0.2 472,928 - SM_b20460 0.26 -0.8 472,928 - SM_b20460 0.26 -3.0 472,928 - SM_b20460 0.26 +2.0 472,987 + SM_b20460 0.29 +0.2 472,987 + SM_b20460 0.29 -0.6 472,988 - SM_b20460 0.29 -0.6 472,997 - SM_b20460 0.30 -0.8 473,002 + SM_b20460 0.30 -1.1 473,104 + SM_b20460 0.36 -0.7 473,104 + SM_b20460 0.36 -2.7 473,105 - SM_b20460 0.36 +0.3 473,105 - SM_b20460 0.36 -0.1 473,171 - SM_b20460 0.39 +0.0 473,210 - SM_b20460 0.41 -0.1 473,236 - SM_b20460 0.43 -0.8 473,249 - SM_b20460 0.43 -0.4 473,437 - SM_b20460 0.53 +0.2 473,461 + SM_b20460 0.55 -3.5 473,461 + SM_b20460 0.55 -0.3 473,461 + SM_b20460 0.55 -2.7 473,462 - SM_b20460 0.55 -0.2 473,462 - SM_b20460 0.55 -3.7 473,462 - SM_b20460 0.55 -0.1 473,617 + SM_b20460 0.63 +2.4 473,635 + SM_b20460 0.64 -0.5 473,669 + SM_b20460 0.66 -0.9 473,674 + SM_b20460 0.66 +0.0 473,675 - SM_b20460 0.66 +0.7 473,779 - SM_b20460 0.72 -0.3 473,959 + SM_b20460 0.81 +0.4 473,959 + SM_b20460 0.81 -1.3 473,959 + SM_b20460 0.81 -0.6 473,959 + SM_b20460 0.81 -0.5 473,960 - SM_b20460 0.81 +0.2 473,960 - SM_b20460 0.81 -1.6 474,193 + -0.7 474,193 + +0.1 474,194 - -0.3 474,240 - -0.1 474,294 - -0.3 474,305 - -1.3 474,305 - -0.6 474,305 - -2.1 474,305 - -0.3 474,485 + SM_b20461 0.28 -0.6 474,485 + SM_b20461 0.28 +1.6 474,485 + SM_b20461 0.28 +1.1 474,486 - SM_b20461 0.28 +0.6 474,486 - SM_b20461 0.28 -0.7 474,486 - SM_b20461 0.28 +0.5 474,486 - SM_b20461 0.28 +1.3 474,720 - SM_b20461 0.66 -0.3 474,720 - SM_b20461 0.66 +0.1 474,749 + SM_b20461 0.71 +0.2 474,750 - SM_b20461 0.71 +0.5 474,877 + -1.4 474,877 + -0.9 474,946 - -1.9 475,093 + SM_b20462 0.17 -1.4 475,198 + SM_b20462 0.28 -0.1 475,199 - SM_b20462 0.28 -0.0
Or see this region's nucleotide sequence