Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20436 and SM_b20441 are separated by 254 nucleotides SM_b20441 and SM_b20442 are separated by 39 nucleotides
SM_b20436: SM_b20436 - nitrate transporter protein, at 450,978 to 452,252
_b20436
SM_b20441: SM_b20441 - transcriptional regulator, at 452,507 to 453,247
_b20441
SM_b20442: SM_b20442 - substrate-binding protein, at 453,287 to 454,261
_b20442
Position (kb) 452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 451.656 kb on + strand, within SM_b20436 at 451.659 kb on + strand, within SM_b20436 at 451.659 kb on + strand, within SM_b20436 at 451.660 kb on - strand, within SM_b20436 at 451.710 kb on + strand, within SM_b20436 at 451.726 kb on - strand, within SM_b20436 at 451.768 kb on - strand, within SM_b20436 at 451.784 kb on + strand, within SM_b20436 at 451.784 kb on + strand, within SM_b20436 at 451.784 kb on + strand, within SM_b20436 at 451.842 kb on + strand, within SM_b20436 at 451.842 kb on + strand, within SM_b20436 at 451.843 kb on - strand, within SM_b20436 at 451.843 kb on - strand, within SM_b20436 at 451.843 kb on - strand, within SM_b20436 at 451.843 kb on - strand, within SM_b20436 at 451.843 kb on - strand, within SM_b20436 at 451.843 kb on - strand, within SM_b20436 at 451.843 kb on - strand, within SM_b20436 at 451.843 kb on - strand, within SM_b20436 at 451.843 kb on - strand, within SM_b20436 at 451.998 kb on + strand, within SM_b20436 at 452.008 kb on + strand, within SM_b20436 at 452.008 kb on + strand, within SM_b20436 at 452.008 kb on + strand, within SM_b20436 at 452.008 kb on + strand, within SM_b20436 at 452.009 kb on - strand, within SM_b20436 at 452.009 kb on - strand, within SM_b20436 at 452.016 kb on + strand, within SM_b20436 at 452.017 kb on - strand at 452.019 kb on + strand, within SM_b20436 at 452.019 kb on + strand, within SM_b20436 at 452.019 kb on + strand, within SM_b20436 at 452.161 kb on + strand at 452.162 kb on - strand at 452.250 kb on + strand at 452.345 kb on - strand at 452.441 kb on + strand at 452.441 kb on + strand at 452.447 kb on - strand at 452.670 kb on + strand, within SM_b20441 at 452.670 kb on + strand, within SM_b20441 at 452.670 kb on + strand, within SM_b20441 at 452.671 kb on - strand, within SM_b20441 at 452.720 kb on + strand, within SM_b20441 at 452.720 kb on + strand, within SM_b20441 at 452.720 kb on + strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.721 kb on - strand, within SM_b20441 at 452.857 kb on + strand, within SM_b20441 at 452.858 kb on - strand, within SM_b20441 at 452.858 kb on - strand, within SM_b20441 at 453.044 kb on + strand, within SM_b20441 at 453.044 kb on + strand, within SM_b20441 at 453.386 kb on + strand, within SM_b20442 at 453.387 kb on - strand, within SM_b20442 at 453.461 kb on + strand, within SM_b20442 at 453.461 kb on + strand, within SM_b20442 at 453.461 kb on + strand, within SM_b20442 at 453.462 kb on - strand, within SM_b20442 at 453.542 kb on - strand, within SM_b20442 at 453.599 kb on + strand, within SM_b20442 at 453.600 kb on - strand, within SM_b20442 at 453.610 kb on + strand, within SM_b20442 at 453.610 kb on + strand, within SM_b20442 at 453.610 kb on + strand, within SM_b20442 at 453.611 kb on - strand, within SM_b20442 at 453.643 kb on + strand, within SM_b20442 at 453.657 kb on + strand, within SM_b20442 at 453.658 kb on - strand, within SM_b20442 at 453.680 kb on + strand, within SM_b20442 at 453.680 kb on + strand, within SM_b20442 at 453.681 kb on - strand, within SM_b20442 at 453.719 kb on + strand, within SM_b20442 at 453.719 kb on + strand, within SM_b20442 at 453.720 kb on - strand, within SM_b20442 at 453.720 kb on - strand, within SM_b20442 at 453.722 kb on + strand, within SM_b20442 at 453.796 kb on - strand, within SM_b20442 at 453.812 kb on + strand, within SM_b20442 at 453.872 kb on + strand, within SM_b20442 at 453.873 kb on - strand, within SM_b20442 at 453.873 kb on - strand, within SM_b20442 at 453.962 kb on - strand, within SM_b20442 at 453.962 kb on - strand, within SM_b20442
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 451,656 + SM_b20436 0.53 +0.1 451,659 + SM_b20436 0.53 -0.8 451,659 + SM_b20436 0.53 -1.0 451,660 - SM_b20436 0.53 +0.4 451,710 + SM_b20436 0.57 -0.6 451,726 - SM_b20436 0.59 -2.0 451,768 - SM_b20436 0.62 -0.3 451,784 + SM_b20436 0.63 -2.3 451,784 + SM_b20436 0.63 -1.8 451,784 + SM_b20436 0.63 -1.0 451,842 + SM_b20436 0.68 +0.7 451,842 + SM_b20436 0.68 +0.8 451,843 - SM_b20436 0.68 +1.1 451,843 - SM_b20436 0.68 +0.6 451,843 - SM_b20436 0.68 -0.2 451,843 - SM_b20436 0.68 -0.3 451,843 - SM_b20436 0.68 -1.6 451,843 - SM_b20436 0.68 +1.9 451,843 - SM_b20436 0.68 +0.8 451,843 - SM_b20436 0.68 +1.3 451,843 - SM_b20436 0.68 +0.3 451,998 + SM_b20436 0.80 +1.8 452,008 + SM_b20436 0.81 +0.9 452,008 + SM_b20436 0.81 -3.3 452,008 + SM_b20436 0.81 -2.3 452,008 + SM_b20436 0.81 +0.1 452,009 - SM_b20436 0.81 -2.4 452,009 - SM_b20436 0.81 +2.2 452,016 + SM_b20436 0.81 -0.1 452,017 - +3.8 452,019 + SM_b20436 0.82 -1.6 452,019 + SM_b20436 0.82 +0.3 452,019 + SM_b20436 0.82 -2.0 452,161 + -0.4 452,162 - +1.3 452,250 + +0.5 452,345 - +1.3 452,441 + -0.4 452,441 + -0.4 452,447 - -1.1 452,670 + SM_b20441 0.22 +1.0 452,670 + SM_b20441 0.22 +0.8 452,670 + SM_b20441 0.22 +0.1 452,671 - SM_b20441 0.22 +2.4 452,720 + SM_b20441 0.29 +0.0 452,720 + SM_b20441 0.29 +0.1 452,720 + SM_b20441 0.29 +1.8 452,721 - SM_b20441 0.29 +3.8 452,721 - SM_b20441 0.29 +1.1 452,721 - SM_b20441 0.29 +0.7 452,721 - SM_b20441 0.29 +0.5 452,721 - SM_b20441 0.29 +0.5 452,721 - SM_b20441 0.29 +0.4 452,857 + SM_b20441 0.47 -2.2 452,858 - SM_b20441 0.47 +2.7 452,858 - SM_b20441 0.47 +0.8 453,044 + SM_b20441 0.72 -0.3 453,044 + SM_b20441 0.72 -2.4 453,386 + SM_b20442 0.10 -0.5 453,387 - SM_b20442 0.10 -0.0 453,461 + SM_b20442 0.18 +1.3 453,461 + SM_b20442 0.18 -0.3 453,461 + SM_b20442 0.18 -1.3 453,462 - SM_b20442 0.18 -0.1 453,542 - SM_b20442 0.26 -0.2 453,599 + SM_b20442 0.32 +0.2 453,600 - SM_b20442 0.32 -3.3 453,610 + SM_b20442 0.33 -1.0 453,610 + SM_b20442 0.33 +0.6 453,610 + SM_b20442 0.33 +0.1 453,611 - SM_b20442 0.33 +1.3 453,643 + SM_b20442 0.37 -0.4 453,657 + SM_b20442 0.38 +0.8 453,658 - SM_b20442 0.38 -0.6 453,680 + SM_b20442 0.40 -0.2 453,680 + SM_b20442 0.40 +1.6 453,681 - SM_b20442 0.40 -0.6 453,719 + SM_b20442 0.44 +0.7 453,719 + SM_b20442 0.44 +0.2 453,720 - SM_b20442 0.44 +0.0 453,720 - SM_b20442 0.44 -1.6 453,722 + SM_b20442 0.45 -0.7 453,796 - SM_b20442 0.52 +0.1 453,812 + SM_b20442 0.54 +0.5 453,872 + SM_b20442 0.60 +1.3 453,873 - SM_b20442 0.60 -0.1 453,873 - SM_b20442 0.60 -0.1 453,962 - SM_b20442 0.69 -0.6 453,962 - SM_b20442 0.69 -0.7
Or see this region's nucleotide sequence