Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20324 and SM_b20325 are separated by 478 nucleotides SM_b20325 and SM_b20326 are separated by 87 nucleotides
SM_b20324: SM_b20324 - ThuR, regulatory protein for trehalosemaltose transport system, at 326,603 to 327,619
_b20324
SM_b20325: SM_b20325 - ABC transporter for D-trehalose/D-maltose/sucrose, substrate-binding component (ThuE) <small>(from data)</small>, at 328,098 to 329,369
_b20325
SM_b20326: SM_b20326 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 1 (ThuF) <small>(from data)</small>, at 329,457 to 330,443
_b20326
Position (kb) 328
329
330 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 327.105 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.301 kb on - strand, within SM_b20324 at 327.301 kb on - strand, within SM_b20324 at 327.323 kb on - strand, within SM_b20324 at 327.324 kb on - strand, within SM_b20324 at 327.570 kb on - strand at 327.646 kb on - strand at 327.756 kb on + strand at 327.756 kb on + strand at 328.118 kb on - strand at 328.118 kb on - strand at 328.118 kb on - strand at 328.185 kb on - strand at 328.500 kb on + strand, within SM_b20325 at 328.500 kb on + strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.669 kb on - strand, within SM_b20325 at 328.833 kb on + strand, within SM_b20325 at 328.889 kb on + strand, within SM_b20325 at 328.890 kb on - strand, within SM_b20325 at 328.900 kb on - strand, within SM_b20325 at 328.905 kb on + strand, within SM_b20325 at 328.937 kb on - strand, within SM_b20325 at 329.032 kb on - strand, within SM_b20325 at 329.073 kb on + strand, within SM_b20325 at 329.446 kb on - strand at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.686 kb on - strand, within SM_b20326 at 329.777 kb on + strand, within SM_b20326 at 329.777 kb on + strand, within SM_b20326 at 330.123 kb on + strand, within SM_b20326 at 330.123 kb on + strand, within SM_b20326 at 330.258 kb on + strand, within SM_b20326 at 330.259 kb on - strand, within SM_b20326
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 327,105 - SM_b20324 0.49 +1.1 327,105 - SM_b20324 0.49 +2.1 327,105 - SM_b20324 0.49 +0.6 327,301 - SM_b20324 0.69 +1.1 327,301 - SM_b20324 0.69 +0.9 327,323 - SM_b20324 0.71 -0.7 327,324 - SM_b20324 0.71 -2.3 327,570 - -0.2 327,646 - -2.1 327,756 + +0.3 327,756 + +0.1 328,118 - +0.8 328,118 - +0.0 328,118 - -0.0 328,185 - -0.3 328,500 + SM_b20325 0.32 +0.6 328,500 + SM_b20325 0.32 +0.0 328,501 - SM_b20325 0.32 -0.4 328,501 - SM_b20325 0.32 -0.2 328,549 - SM_b20325 0.35 +1.0 328,549 - SM_b20325 0.35 +1.3 328,549 - SM_b20325 0.35 -0.1 328,669 - SM_b20325 0.45 +0.1 328,833 + SM_b20325 0.58 +0.8 328,889 + SM_b20325 0.62 +0.3 328,890 - SM_b20325 0.62 -2.8 328,900 - SM_b20325 0.63 -0.1 328,905 + SM_b20325 0.63 +0.5 328,937 - SM_b20325 0.66 +0.6 329,032 - SM_b20325 0.73 +1.7 329,073 + SM_b20325 0.77 +0.2 329,446 - -3.2 329,619 + SM_b20326 0.16 -0.7 329,619 + SM_b20326 0.16 +0.2 329,619 + SM_b20326 0.16 +0.3 329,619 + SM_b20326 0.16 +3.2 329,686 - SM_b20326 0.23 -0.9 329,777 + SM_b20326 0.32 -2.4 329,777 + SM_b20326 0.32 -2.4 330,123 + SM_b20326 0.67 -2.6 330,123 + SM_b20326 0.67 +0.1 330,258 + SM_b20326 0.81 -0.2 330,259 - SM_b20326 0.81 -0.1
Or see this region's nucleotide sequence