Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20288 and SM_b20289 are separated by 109 nucleotides SM_b20289 and SM_b20290 are separated by 151 nucleotides
SM_b20288: SM_b20288 - hypothetical protein, at 292,723 to 294,123
_b20288
SM_b20289: SM_b20289 - permease, at 294,233 to 295,582
_b20289
SM_b20290: SM_b20290 - transcriptional regulator, at 295,734 to 296,729
_b20290
Position (kb) 294
295
296 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 293.502 kb on + strand, within SM_b20288 at 293.502 kb on + strand, within SM_b20288 at 293.502 kb on + strand, within SM_b20288 at 293.502 kb on + strand, within SM_b20288 at 293.503 kb on - strand, within SM_b20288 at 293.503 kb on - strand, within SM_b20288 at 293.656 kb on + strand, within SM_b20288 at 293.657 kb on - strand, within SM_b20288 at 293.706 kb on + strand, within SM_b20288 at 293.706 kb on + strand, within SM_b20288 at 293.872 kb on + strand, within SM_b20288 at 293.907 kb on + strand, within SM_b20288 at 294.129 kb on + strand at 294.129 kb on + strand at 294.235 kb on - strand at 294.278 kb on + strand at 294.278 kb on + strand at 294.381 kb on + strand, within SM_b20289 at 294.382 kb on - strand, within SM_b20289 at 294.407 kb on + strand, within SM_b20289 at 294.679 kb on + strand, within SM_b20289 at 294.680 kb on - strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.937 kb on + strand, within SM_b20289 at 294.938 kb on - strand, within SM_b20289 at 294.938 kb on - strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 294.939 kb on + strand, within SM_b20289 at 295.122 kb on + strand, within SM_b20289 at 295.122 kb on + strand, within SM_b20289 at 295.123 kb on - strand, within SM_b20289 at 295.139 kb on + strand, within SM_b20289 at 295.140 kb on - strand, within SM_b20289 at 295.185 kb on + strand, within SM_b20289 at 295.205 kb on + strand, within SM_b20289 at 295.224 kb on + strand, within SM_b20289 at 295.224 kb on + strand, within SM_b20289 at 295.224 kb on + strand, within SM_b20289 at 295.225 kb on - strand, within SM_b20289 at 295.225 kb on - strand, within SM_b20289 at 295.559 kb on - strand at 295.647 kb on - strand at 295.647 kb on - strand at 295.818 kb on + strand at 295.818 kb on + strand at 295.819 kb on - strand at 296.158 kb on + strand, within SM_b20290 at 296.310 kb on + strand, within SM_b20290 at 296.310 kb on + strand, within SM_b20290 at 296.359 kb on - strand, within SM_b20290
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 293,502 + SM_b20288 0.56 +0.2 293,502 + SM_b20288 0.56 +1.2 293,502 + SM_b20288 0.56 -0.3 293,502 + SM_b20288 0.56 +0.1 293,503 - SM_b20288 0.56 -0.6 293,503 - SM_b20288 0.56 +0.3 293,656 + SM_b20288 0.67 -1.2 293,657 - SM_b20288 0.67 -2.1 293,706 + SM_b20288 0.70 +0.7 293,706 + SM_b20288 0.70 +1.0 293,872 + SM_b20288 0.82 -1.0 293,907 + SM_b20288 0.85 -0.1 294,129 + +0.3 294,129 + -0.3 294,235 - -0.5 294,278 + +0.0 294,278 + -3.6 294,381 + SM_b20289 0.11 -0.1 294,382 - SM_b20289 0.11 -4.1 294,407 + SM_b20289 0.13 -1.0 294,679 + SM_b20289 0.33 -3.9 294,680 - SM_b20289 0.33 +1.3 294,937 + SM_b20289 0.52 -1.3 294,937 + SM_b20289 0.52 -0.6 294,937 + SM_b20289 0.52 +0.7 294,937 + SM_b20289 0.52 -1.5 294,937 + SM_b20289 0.52 +3.9 294,937 + SM_b20289 0.52 -0.1 294,938 - SM_b20289 0.52 -0.6 294,938 - SM_b20289 0.52 +0.2 294,939 + SM_b20289 0.52 -0.1 294,939 + SM_b20289 0.52 -0.0 294,939 + SM_b20289 0.52 -0.2 295,122 + SM_b20289 0.66 -0.6 295,122 + SM_b20289 0.66 -0.1 295,123 - SM_b20289 0.66 -3.7 295,139 + SM_b20289 0.67 -3.2 295,140 - SM_b20289 0.67 -0.4 295,185 + SM_b20289 0.71 -0.5 295,205 + SM_b20289 0.72 -1.7 295,224 + SM_b20289 0.73 -0.6 295,224 + SM_b20289 0.73 -0.6 295,224 + SM_b20289 0.73 +0.3 295,225 - SM_b20289 0.73 -1.0 295,225 - SM_b20289 0.73 +0.0 295,559 - -1.4 295,647 - +0.6 295,647 - +0.3 295,818 + -0.7 295,818 + +2.7 295,819 - +1.6 296,158 + SM_b20290 0.43 -3.2 296,310 + SM_b20290 0.58 -3.2 296,310 + SM_b20290 0.58 +0.5 296,359 - SM_b20290 0.63 -1.5
Or see this region's nucleotide sequence