Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20261 and SM_b20262 are separated by 242 nucleotides SM_b20262 and SM_b20263 are separated by 186 nucleotides
SM_b20261: SM_b20261 - malate dehydrogenase, at 265,534 to 266,571
_b20261
SM_b20262: SM_b20262 - semialdehyde dehydrogenase, at 266,814 to 268,331
_b20262
SM_b20263: SM_b20263 - amino acid ABC transporter substrate-binding protein, at 268,518 to 269,324
_b20263
Position (kb) 266
267
268
269 Strain fitness (log2 ratio) -2
-1
0
1
2 at 266.045 kb on + strand, within SM_b20261 at 266.046 kb on - strand, within SM_b20261 at 266.327 kb on - strand, within SM_b20261 at 266.589 kb on - strand at 266.589 kb on - strand at 266.636 kb on + strand at 266.637 kb on - strand at 266.678 kb on - strand at 266.679 kb on + strand at 266.679 kb on + strand at 266.680 kb on - strand at 266.707 kb on + strand at 266.758 kb on + strand at 266.929 kb on + strand at 266.929 kb on + strand at 266.929 kb on + strand at 266.930 kb on - strand at 266.979 kb on + strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.980 kb on - strand, within SM_b20262 at 266.986 kb on - strand, within SM_b20262 at 267.156 kb on - strand, within SM_b20262 at 267.171 kb on + strand, within SM_b20262 at 267.172 kb on - strand, within SM_b20262 at 267.232 kb on + strand, within SM_b20262 at 267.233 kb on - strand, within SM_b20262 at 267.355 kb on + strand, within SM_b20262 at 267.356 kb on - strand, within SM_b20262 at 267.445 kb on + strand, within SM_b20262 at 267.506 kb on + strand, within SM_b20262 at 268.079 kb on + strand, within SM_b20262 at 268.439 kb on + strand at 268.439 kb on + strand at 268.468 kb on + strand at 268.469 kb on - strand at 268.698 kb on + strand, within SM_b20263 at 268.860 kb on + strand, within SM_b20263 at 268.861 kb on - strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.959 kb on + strand, within SM_b20263 at 268.960 kb on - strand, within SM_b20263 at 269.019 kb on + strand, within SM_b20263 at 269.081 kb on + strand at 269.196 kb on + strand, within SM_b20263
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 266,045 + SM_b20261 0.49 +0.5 266,046 - SM_b20261 0.49 +0.3 266,327 - SM_b20261 0.76 -0.4 266,589 - +1.2 266,589 - -0.8 266,636 + -1.8 266,637 - -1.3 266,678 - -2.6 266,679 + -0.3 266,679 + +1.2 266,680 - +1.1 266,707 + -2.5 266,758 + +1.9 266,929 + -0.5 266,929 + +0.6 266,929 + -1.5 266,930 - +0.3 266,979 + SM_b20262 0.11 -0.5 266,980 - SM_b20262 0.11 +0.9 266,980 - SM_b20262 0.11 -0.1 266,980 - SM_b20262 0.11 -1.0 266,986 - SM_b20262 0.11 +1.3 267,156 - SM_b20262 0.23 +1.1 267,171 + SM_b20262 0.24 +0.4 267,172 - SM_b20262 0.24 +0.4 267,232 + SM_b20262 0.28 -0.4 267,233 - SM_b20262 0.28 +0.4 267,355 + SM_b20262 0.36 +0.4 267,356 - SM_b20262 0.36 +0.1 267,445 + SM_b20262 0.42 -1.3 267,506 + SM_b20262 0.46 +1.1 268,079 + SM_b20262 0.83 +0.2 268,439 + -0.2 268,439 + +0.7 268,468 + -0.7 268,469 - -0.1 268,698 + SM_b20263 0.22 +0.6 268,860 + SM_b20263 0.42 +0.0 268,861 - SM_b20263 0.43 +0.2 268,959 + SM_b20263 0.55 +1.7 268,959 + SM_b20263 0.55 +0.7 268,959 + SM_b20263 0.55 +0.2 268,959 + SM_b20263 0.55 +0.2 268,960 - SM_b20263 0.55 -1.0 269,019 + SM_b20263 0.62 +0.8 269,081 + +1.3 269,196 + SM_b20263 0.84 -0.3
Or see this region's nucleotide sequence