Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5267 and Pf1N1B4_5268 are separated by 208 nucleotides
Pf1N1B4_5267 - hypothetical protein, at 24,892 to 25,410
_5267
Pf1N1B4_5268 - hypothetical protein, at 25,619 to 26,140
_5268
Position (kb) 24
25
26 Strain fitness (log2 ratio) -2
-1
0
1
2 at 23.932 kb on + strand at 23.942 kb on + strand at 23.942 kb on + strand at 23.942 kb on + strand at 24.094 kb on + strand at 24.094 kb on + strand at 24.094 kb on + strand at 24.156 kb on + strand at 24.292 kb on + strand at 24.292 kb on + strand at 24.293 kb on - strand at 24.293 kb on - strand at 24.293 kb on - strand at 24.298 kb on + strand at 24.298 kb on + strand at 24.298 kb on + strand at 24.298 kb on + strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.299 kb on - strand at 24.550 kb on + strand at 24.596 kb on + strand at 24.597 kb on - strand at 24.600 kb on - strand at 24.614 kb on - strand at 24.617 kb on - strand at 24.725 kb on - strand at 24.727 kb on + strand at 24.728 kb on - strand at 24.800 kb on + strand at 24.811 kb on + strand at 24.811 kb on + strand at 24.811 kb on + strand at 24.812 kb on - strand at 25.039 kb on + strand, within Pf1N1B4_5267 at 25.040 kb on - strand at 25.040 kb on - strand, within Pf1N1B4_5267 at 25.040 kb on - strand, within Pf1N1B4_5267 at 25.125 kb on + strand, within Pf1N1B4_5267 at 25.125 kb on + strand, within Pf1N1B4_5267 at 25.125 kb on + strand, within Pf1N1B4_5267 at 25.126 kb on - strand, within Pf1N1B4_5267 at 25.126 kb on - strand, within Pf1N1B4_5267 at 25.126 kb on - strand, within Pf1N1B4_5267 at 25.126 kb on - strand, within Pf1N1B4_5267 at 25.204 kb on + strand, within Pf1N1B4_5267 at 25.204 kb on + strand, within Pf1N1B4_5267 at 25.205 kb on - strand, within Pf1N1B4_5267 at 25.320 kb on + strand, within Pf1N1B4_5267 at 25.321 kb on - strand, within Pf1N1B4_5267 at 25.476 kb on + strand at 25.575 kb on + strand at 25.841 kb on + strand, within Pf1N1B4_5268 at 25.850 kb on + strand, within Pf1N1B4_5268 at 25.850 kb on + strand, within Pf1N1B4_5268 at 25.850 kb on + strand, within Pf1N1B4_5268 at 25.850 kb on + strand, within Pf1N1B4_5268 at 25.979 kb on + strand, within Pf1N1B4_5268 at 25.979 kb on + strand, within Pf1N1B4_5268 at 25.979 kb on + strand, within Pf1N1B4_5268 at 25.989 kb on + strand, within Pf1N1B4_5268 at 25.990 kb on - strand, within Pf1N1B4_5268 at 25.990 kb on - strand, within Pf1N1B4_5268 at 26.054 kb on + strand, within Pf1N1B4_5268 at 26.054 kb on + strand, within Pf1N1B4_5268 at 26.054 kb on + strand, within Pf1N1B4_5268 at 26.055 kb on - strand, within Pf1N1B4_5268 at 26.058 kb on + strand at 26.058 kb on + strand, within Pf1N1B4_5268 at 26.058 kb on + strand, within Pf1N1B4_5268 at 26.058 kb on + strand, within Pf1N1B4_5268 at 26.058 kb on + strand, within Pf1N1B4_5268 at 26.058 kb on + strand, within Pf1N1B4_5268 at 26.059 kb on - strand, within Pf1N1B4_5268 at 26.059 kb on - strand, within Pf1N1B4_5268 at 26.128 kb on - strand at 26.128 kb on - strand at 26.166 kb on + strand at 26.166 kb on + strand at 26.167 kb on - strand at 26.189 kb on + strand at 26.189 kb on + strand at 26.190 kb on - strand at 26.190 kb on - strand at 26.227 kb on - strand at 26.348 kb on + strand at 26.348 kb on + strand at 26.382 kb on - strand at 26.385 kb on + strand at 26.386 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 23,932 + -1.9 23,942 + +0.7 23,942 + -0.9 23,942 + -0.0 24,094 + -0.2 24,094 + -0.3 24,094 + +1.0 24,156 + +0.5 24,292 + -0.9 24,292 + -0.3 24,293 - +0.5 24,293 - -1.6 24,293 - +0.7 24,298 + +0.5 24,298 + +0.7 24,298 + +2.0 24,298 + -0.0 24,299 - +1.7 24,299 - +0.7 24,299 - -0.7 24,299 - -0.7 24,299 - +1.7 24,299 - +1.7 24,299 - -2.1 24,299 - -1.6 24,299 - -0.3 24,299 - +0.5 24,299 - -0.7 24,299 - -0.9 24,299 - +0.3 24,299 - -1.3 24,299 - -0.3 24,299 - +0.7 24,299 - +0.6 24,299 - -0.3 24,550 + +0.5 24,596 + -0.3 24,597 - +0.6 24,600 - -0.3 24,614 - +0.3 24,617 - -0.3 24,725 - -0.3 24,727 + +0.4 24,728 - +0.9 24,800 + +0.7 24,811 + +0.7 24,811 + +0.3 24,811 + -1.3 24,812 - -0.9 25,039 + Pf1N1B4_5267 0.28 +0.7 25,040 - +0.7 25,040 - Pf1N1B4_5267 0.29 +1.3 25,040 - Pf1N1B4_5267 0.29 +1.7 25,125 + Pf1N1B4_5267 0.45 +0.5 25,125 + Pf1N1B4_5267 0.45 +0.1 25,125 + Pf1N1B4_5267 0.45 +1.1 25,126 - Pf1N1B4_5267 0.45 -0.1 25,126 - Pf1N1B4_5267 0.45 -0.6 25,126 - Pf1N1B4_5267 0.45 +1.1 25,126 - Pf1N1B4_5267 0.45 -0.3 25,204 + Pf1N1B4_5267 0.60 -1.3 25,204 + Pf1N1B4_5267 0.60 +2.0 25,205 - Pf1N1B4_5267 0.60 +1.5 25,320 + Pf1N1B4_5267 0.82 -1.3 25,321 - Pf1N1B4_5267 0.83 -0.3 25,476 + -0.6 25,575 + -0.4 25,841 + Pf1N1B4_5268 0.43 -2.1 25,850 + Pf1N1B4_5268 0.44 +0.7 25,850 + Pf1N1B4_5268 0.44 +1.0 25,850 + Pf1N1B4_5268 0.44 -1.9 25,850 + Pf1N1B4_5268 0.44 -0.4 25,979 + Pf1N1B4_5268 0.69 +0.7 25,979 + Pf1N1B4_5268 0.69 +0.0 25,979 + Pf1N1B4_5268 0.69 +0.0 25,989 + Pf1N1B4_5268 0.71 -0.0 25,990 - Pf1N1B4_5268 0.71 +0.3 25,990 - Pf1N1B4_5268 0.71 +0.1 26,054 + Pf1N1B4_5268 0.83 -2.0 26,054 + Pf1N1B4_5268 0.83 -0.9 26,054 + Pf1N1B4_5268 0.83 +0.4 26,055 - Pf1N1B4_5268 0.84 -1.3 26,058 + +0.3 26,058 + Pf1N1B4_5268 0.84 -2.1 26,058 + Pf1N1B4_5268 0.84 -0.1 26,058 + Pf1N1B4_5268 0.84 +0.9 26,058 + Pf1N1B4_5268 0.84 +1.0 26,058 + Pf1N1B4_5268 0.84 +0.2 26,059 - Pf1N1B4_5268 0.84 +0.1 26,059 - Pf1N1B4_5268 0.84 -1.3 26,128 - +0.4 26,128 - +0.0 26,166 + +0.1 26,166 + -1.2 26,167 - -0.4 26,189 + +0.9 26,189 + +0.2 26,190 - +0.7 26,190 - -2.1 26,227 - -0.1 26,348 + +0.4 26,348 + -0.3 26,382 - +0.5 26,385 + +0.2 26,386 - -0.3
Or see this region's nucleotide sequence