Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4970 and Pf1N1B4_4971 are separated by 77 nucleotides Pf1N1B4_4971 and Pf1N1B4_4972 overlap by 4 nucleotides Pf1N1B4_4972 and Pf1N1B4_4973 are separated by 114 nucleotides Pf1N1B4_4973 and Pf1N1B4_4974 are separated by 32 nucleotides
Pf1N1B4_4970 - hypothetical protein, at 5,511,311 to 5,511,718
_4970
Pf1N1B4_4971 - hypothetical protein, at 5,511,796 to 5,512,161
_4971
Pf1N1B4_4972 - CELL PROCESSES; Adaptation; adaptations, atypical conditions, at 5,512,158 to 5,512,988
_4972
Pf1N1B4_4973 - hypothetical protein, at 5,513,103 to 5,513,387
_4973
Pf1N1B4_4974 - Protease subunit of ATP-dependent Clp proteases, at 5,513,420 to 5,513,977
_4974
Position (kb) 5512
5513 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5511.301 kb on + strand at 5511.301 kb on + strand at 5511.302 kb on - strand at 5511.321 kb on - strand at 5511.321 kb on - strand at 5511.579 kb on - strand, within Pf1N1B4_4970 at 5511.839 kb on + strand, within Pf1N1B4_4971 at 5511.976 kb on + strand, within Pf1N1B4_4971 at 5511.977 kb on - strand, within Pf1N1B4_4971 at 5512.244 kb on + strand, within Pf1N1B4_4972 at 5512.245 kb on - strand, within Pf1N1B4_4972 at 5512.857 kb on + strand, within Pf1N1B4_4972 at 5512.857 kb on + strand, within Pf1N1B4_4972 at 5512.857 kb on + strand, within Pf1N1B4_4972 at 5512.993 kb on + strand at 5513.057 kb on - strand at 5513.095 kb on + strand at 5513.096 kb on - strand at 5513.167 kb on + strand, within Pf1N1B4_4973 at 5513.202 kb on + strand, within Pf1N1B4_4973 at 5513.203 kb on - strand, within Pf1N1B4_4973 at 5513.203 kb on - strand, within Pf1N1B4_4973 at 5513.205 kb on + strand, within Pf1N1B4_4973 at 5513.205 kb on + strand, within Pf1N1B4_4973 at 5513.258 kb on + strand, within Pf1N1B4_4973 at 5513.263 kb on - strand, within Pf1N1B4_4973 at 5513.263 kb on - strand, within Pf1N1B4_4973 at 5513.263 kb on - strand, within Pf1N1B4_4973 at 5513.263 kb on - strand, within Pf1N1B4_4973 at 5513.269 kb on + strand, within Pf1N1B4_4973 at 5513.270 kb on - strand, within Pf1N1B4_4973 at 5513.499 kb on - strand, within Pf1N1B4_4974 at 5513.634 kb on + strand, within Pf1N1B4_4974 at 5513.676 kb on + strand at 5513.821 kb on - strand, within Pf1N1B4_4974
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,511,301 + +0.6 5,511,301 + -0.8 5,511,302 - +0.2 5,511,321 - +1.6 5,511,321 - -1.5 5,511,579 - Pf1N1B4_4970 0.66 -1.6 5,511,839 + Pf1N1B4_4971 0.12 -2.5 5,511,976 + Pf1N1B4_4971 0.49 -0.5 5,511,977 - Pf1N1B4_4971 0.49 +0.9 5,512,244 + Pf1N1B4_4972 0.10 +0.3 5,512,245 - Pf1N1B4_4972 0.10 +0.0 5,512,857 + Pf1N1B4_4972 0.84 -1.9 5,512,857 + Pf1N1B4_4972 0.84 -1.0 5,512,857 + Pf1N1B4_4972 0.84 -0.3 5,512,993 + +0.7 5,513,057 - +0.0 5,513,095 + -0.6 5,513,096 - -0.1 5,513,167 + Pf1N1B4_4973 0.22 +1.5 5,513,202 + Pf1N1B4_4973 0.35 -0.4 5,513,203 - Pf1N1B4_4973 0.35 +0.1 5,513,203 - Pf1N1B4_4973 0.35 -0.3 5,513,205 + Pf1N1B4_4973 0.36 +0.5 5,513,205 + Pf1N1B4_4973 0.36 +0.8 5,513,258 + Pf1N1B4_4973 0.54 -1.5 5,513,263 - Pf1N1B4_4973 0.56 -0.9 5,513,263 - Pf1N1B4_4973 0.56 +2.3 5,513,263 - Pf1N1B4_4973 0.56 -2.2 5,513,263 - Pf1N1B4_4973 0.56 +0.0 5,513,269 + Pf1N1B4_4973 0.58 -1.0 5,513,270 - Pf1N1B4_4973 0.59 +0.0 5,513,499 - Pf1N1B4_4974 0.14 +1.2 5,513,634 + Pf1N1B4_4974 0.38 -0.3 5,513,676 + -0.6 5,513,821 - Pf1N1B4_4974 0.72 -0.4
Or see this region's nucleotide sequence