Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4757

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4756 and Pf1N1B4_4757 are separated by 145 nucleotidesPf1N1B4_4757 and Pf1N1B4_4758 are separated by 291 nucleotides Pf1N1B4_4756 - Magnesium and cobalt transport protein CorA, at 5,254,479 to 5,255,402 _4756 Pf1N1B4_4757 - FIG00958264: hypothetical protein, at 5,255,548 to 5,255,883 _4757 Pf1N1B4_4758 - Threonine dehydratase biosynthetic (EC 4.3.1.19), at 5,256,175 to 5,257,188 _4758 Position (kb) 5255 5256Strain fitness (log2 ratio) -2 -1 0 1 2at 5254.704 kb on + strand, within Pf1N1B4_4756at 5254.704 kb on + strand, within Pf1N1B4_4756at 5254.871 kb on + strand, within Pf1N1B4_4756at 5254.881 kb on + strandat 5254.963 kb on + strand, within Pf1N1B4_4756at 5254.964 kb on - strand, within Pf1N1B4_4756at 5254.998 kb on + strand, within Pf1N1B4_4756at 5254.998 kb on + strand, within Pf1N1B4_4756at 5254.998 kb on + strand, within Pf1N1B4_4756at 5254.998 kb on + strandat 5254.998 kb on + strand, within Pf1N1B4_4756at 5254.998 kb on + strand, within Pf1N1B4_4756at 5254.999 kb on - strand, within Pf1N1B4_4756at 5254.999 kb on - strandat 5255.001 kb on + strand, within Pf1N1B4_4756at 5255.002 kb on - strand, within Pf1N1B4_4756at 5255.002 kb on - strand, within Pf1N1B4_4756at 5255.127 kb on + strand, within Pf1N1B4_4756at 5255.128 kb on - strand, within Pf1N1B4_4756at 5255.145 kb on + strand, within Pf1N1B4_4756at 5255.450 kb on + strandat 5255.450 kb on + strandat 5255.450 kb on + strandat 5255.491 kb on - strandat 5255.655 kb on - strand, within Pf1N1B4_4757at 5255.702 kb on + strand, within Pf1N1B4_4757at 5255.702 kb on + strand, within Pf1N1B4_4757at 5255.702 kb on + strand, within Pf1N1B4_4757at 5255.703 kb on - strand, within Pf1N1B4_4757at 5255.735 kb on + strand, within Pf1N1B4_4757at 5255.737 kb on + strand, within Pf1N1B4_4757at 5255.738 kb on - strand, within Pf1N1B4_4757at 5255.738 kb on - strand, within Pf1N1B4_4757at 5255.738 kb on - strand, within Pf1N1B4_4757at 5255.738 kb on - strand, within Pf1N1B4_4757at 5255.738 kb on - strand, within Pf1N1B4_4757at 5255.738 kb on - strand, within Pf1N1B4_4757at 5255.738 kb on - strand, within Pf1N1B4_4757at 5255.738 kb on - strand, within Pf1N1B4_4757at 5255.834 kb on + strand, within Pf1N1B4_4757at 5255.922 kb on + strandat 5255.923 kb on - strandat 5255.995 kb on + strandat 5255.995 kb on + strandat 5256.017 kb on + strandat 5256.017 kb on + strandat 5256.018 kb on - strandat 5256.018 kb on - strandat 5256.018 kb on - strandat 5256.018 kb on - strandat 5256.018 kb on - strandat 5256.018 kb on - strandat 5256.018 kb on - strandat 5256.018 kb on - strandat 5256.020 kb on + strandat 5256.214 kb on + strandat 5256.215 kb on - strandat 5256.215 kb on - strandat 5256.368 kb on - strand, within Pf1N1B4_4758at 5256.521 kb on + strand, within Pf1N1B4_4758at 5256.522 kb on - strand, within Pf1N1B4_4758at 5256.590 kb on - strand, within Pf1N1B4_4758at 5256.776 kb on - strand, within Pf1N1B4_4758

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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5,254,704 + Pf1N1B4_4756 0.24 +1.0
5,254,704 + Pf1N1B4_4756 0.24 +0.3
5,254,871 + Pf1N1B4_4756 0.42 +0.7
5,254,881 + +1.0
5,254,963 + Pf1N1B4_4756 0.52 -1.4
5,254,964 - Pf1N1B4_4756 0.52 +0.4
5,254,998 + Pf1N1B4_4756 0.56 -1.6
5,254,998 + Pf1N1B4_4756 0.56 +0.0
5,254,998 + Pf1N1B4_4756 0.56 -0.7
5,254,998 + -2.0
5,254,998 + Pf1N1B4_4756 0.56 +0.1
5,254,998 + Pf1N1B4_4756 0.56 -0.1
5,254,999 - Pf1N1B4_4756 0.56 -0.4
5,254,999 - +1.0
5,255,001 + Pf1N1B4_4756 0.56 -1.3
5,255,002 - Pf1N1B4_4756 0.57 +0.0
5,255,002 - Pf1N1B4_4756 0.57 -0.4
5,255,127 + Pf1N1B4_4756 0.70 -1.4
5,255,128 - Pf1N1B4_4756 0.70 -1.0
5,255,145 + Pf1N1B4_4756 0.72 -1.6
5,255,450 + -0.4
5,255,450 + -1.6
5,255,450 + +0.0
5,255,491 - +0.0
5,255,655 - Pf1N1B4_4757 0.32 -0.0
5,255,702 + Pf1N1B4_4757 0.46 -1.2
5,255,702 + Pf1N1B4_4757 0.46 -2.3
5,255,702 + Pf1N1B4_4757 0.46 +0.0
5,255,703 - Pf1N1B4_4757 0.46 -0.1
5,255,735 + Pf1N1B4_4757 0.56 -0.8
5,255,737 + Pf1N1B4_4757 0.56 -0.2
5,255,738 - Pf1N1B4_4757 0.57 -1.0
5,255,738 - Pf1N1B4_4757 0.57 -1.6
5,255,738 - Pf1N1B4_4757 0.57 -0.1
5,255,738 - Pf1N1B4_4757 0.57 -1.0
5,255,738 - Pf1N1B4_4757 0.57 -0.1
5,255,738 - Pf1N1B4_4757 0.57 -2.5
5,255,738 - Pf1N1B4_4757 0.57 -1.6
5,255,738 - Pf1N1B4_4757 0.57 -1.6
5,255,834 + Pf1N1B4_4757 0.85 -0.4
5,255,922 + -0.1
5,255,923 - +0.0
5,255,995 + +1.8
5,255,995 + -0.6
5,256,017 + -0.6
5,256,017 + +0.2
5,256,018 - -1.6
5,256,018 - -0.4
5,256,018 - +0.1
5,256,018 - +0.7
5,256,018 - -1.0
5,256,018 - -0.2
5,256,018 - -2.0
5,256,018 - +0.0
5,256,020 + +0.2
5,256,214 + +1.3
5,256,215 - +0.6
5,256,215 - +0.7
5,256,368 - Pf1N1B4_4758 0.19 +0.0
5,256,521 + Pf1N1B4_4758 0.34 +0.0
5,256,522 - Pf1N1B4_4758 0.34 +0.3
5,256,590 - Pf1N1B4_4758 0.41 -0.4
5,256,776 - Pf1N1B4_4758 0.59 +0.0

Or see this region's nucleotide sequence