Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3835 and Pf1N1B4_3836 overlap by 1 nucleotides Pf1N1B4_3836 and Pf1N1B4_3837 overlap by 4 nucleotides
Pf1N1B4_3835 - Nitrate reductase (EC 1.7.99.4) (from data) , at 4,248,480 to 4,251,194
_3835
Pf1N1B4_3836 - Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4), at 4,251,194 to 4,251,511
_3836
Pf1N1B4_3837 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 4,251,508 to 4,253,961
_3837
Position (kb)
4251
4252 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4250.413 kb on + strand, within Pf1N1B4_3835 at 4250.414 kb on - strand, within Pf1N1B4_3835 at 4250.414 kb on - strand at 4250.414 kb on - strand, within Pf1N1B4_3835 at 4250.414 kb on - strand, within Pf1N1B4_3835 at 4250.414 kb on - strand, within Pf1N1B4_3835 at 4250.668 kb on + strand, within Pf1N1B4_3835 at 4250.722 kb on + strand, within Pf1N1B4_3835 at 4250.722 kb on + strand, within Pf1N1B4_3835 at 4250.722 kb on + strand, within Pf1N1B4_3835 at 4250.722 kb on + strand, within Pf1N1B4_3835 at 4250.722 kb on + strand, within Pf1N1B4_3835 at 4250.722 kb on + strand at 4250.722 kb on + strand, within Pf1N1B4_3835 at 4250.723 kb on - strand, within Pf1N1B4_3835 at 4250.723 kb on - strand, within Pf1N1B4_3835 at 4250.723 kb on - strand, within Pf1N1B4_3835 at 4250.723 kb on - strand, within Pf1N1B4_3835 at 4250.798 kb on + strand, within Pf1N1B4_3835 at 4250.798 kb on + strand at 4250.798 kb on + strand, within Pf1N1B4_3835 at 4250.799 kb on - strand, within Pf1N1B4_3835 at 4250.799 kb on - strand, within Pf1N1B4_3835 at 4250.799 kb on - strand, within Pf1N1B4_3835 at 4250.851 kb on + strand, within Pf1N1B4_3835 at 4250.851 kb on + strand, within Pf1N1B4_3835 at 4250.852 kb on - strand, within Pf1N1B4_3835 at 4250.852 kb on - strand, within Pf1N1B4_3835 at 4250.852 kb on - strand, within Pf1N1B4_3835 at 4250.852 kb on - strand, within Pf1N1B4_3835 at 4250.852 kb on - strand, within Pf1N1B4_3835 at 4250.852 kb on - strand, within Pf1N1B4_3835 at 4250.854 kb on + strand, within Pf1N1B4_3835 at 4250.854 kb on + strand, within Pf1N1B4_3835 at 4250.854 kb on + strand, within Pf1N1B4_3835 at 4250.854 kb on + strand, within Pf1N1B4_3835 at 4250.855 kb on - strand, within Pf1N1B4_3835 at 4250.855 kb on - strand, within Pf1N1B4_3835 at 4250.882 kb on + strand, within Pf1N1B4_3835 at 4250.882 kb on + strand, within Pf1N1B4_3835 at 4250.882 kb on + strand, within Pf1N1B4_3835 at 4250.882 kb on + strand, within Pf1N1B4_3835 at 4250.883 kb on - strand at 4250.883 kb on - strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.884 kb on + strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4250.885 kb on - strand, within Pf1N1B4_3835 at 4251.010 kb on + strand at 4251.059 kb on + strand at 4251.060 kb on - strand at 4251.269 kb on - strand, within Pf1N1B4_3836 at 4251.269 kb on - strand, within Pf1N1B4_3836 at 4251.342 kb on + strand, within Pf1N1B4_3836 at 4251.343 kb on - strand, within Pf1N1B4_3836 at 4251.702 kb on - strand at 4251.722 kb on + strand at 4251.722 kb on + strand at 4251.723 kb on - strand at 4251.723 kb on - strand at 4251.723 kb on - strand at 4251.764 kb on + strand at 4251.765 kb on - strand, within Pf1N1B4_3837 at 4251.845 kb on + strand, within Pf1N1B4_3837 at 4251.845 kb on + strand, within Pf1N1B4_3837 at 4251.845 kb on + strand, within Pf1N1B4_3837 at 4251.845 kb on + strand, within Pf1N1B4_3837 at 4251.845 kb on + strand, within Pf1N1B4_3837 at 4251.845 kb on + strand, within Pf1N1B4_3837 at 4251.846 kb on - strand, within Pf1N1B4_3837 at 4251.846 kb on - strand, within Pf1N1B4_3837 at 4251.846 kb on - strand at 4251.846 kb on - strand, within Pf1N1B4_3837 at 4251.846 kb on - strand, within Pf1N1B4_3837 at 4251.846 kb on - strand, within Pf1N1B4_3837 at 4251.846 kb on - strand, within Pf1N1B4_3837 at 4251.874 kb on - strand, within Pf1N1B4_3837 at 4252.181 kb on + strand, within Pf1N1B4_3837 at 4252.181 kb on + strand, within Pf1N1B4_3837 at 4252.181 kb on + strand, within Pf1N1B4_3837 at 4252.182 kb on - strand, within Pf1N1B4_3837 at 4252.182 kb on - strand, within Pf1N1B4_3837 at 4252.252 kb on + strand, within Pf1N1B4_3837 at 4252.259 kb on + strand, within Pf1N1B4_3837 at 4252.259 kb on + strand, within Pf1N1B4_3837 at 4252.259 kb on + strand, within Pf1N1B4_3837 at 4252.259 kb on + strand, within Pf1N1B4_3837 at 4252.259 kb on + strand at 4252.259 kb on + strand, within Pf1N1B4_3837 at 4252.259 kb on + strand, within Pf1N1B4_3837 at 4252.259 kb on + strand, within Pf1N1B4_3837 at 4252.260 kb on - strand, within Pf1N1B4_3837 at 4252.260 kb on - strand, within Pf1N1B4_3837 at 4252.260 kb on - strand, within Pf1N1B4_3837 at 4252.260 kb on - strand, within Pf1N1B4_3837 at 4252.260 kb on - strand, within Pf1N1B4_3837 at 4252.260 kb on - strand, within Pf1N1B4_3837 at 4252.356 kb on - strand, within Pf1N1B4_3837 at 4252.358 kb on + strand, within Pf1N1B4_3837 at 4252.358 kb on + strand, within Pf1N1B4_3837 at 4252.358 kb on + strand, within Pf1N1B4_3837 at 4252.358 kb on + strand, within Pf1N1B4_3837 at 4252.358 kb on + strand, within Pf1N1B4_3837 at 4252.359 kb on - strand, within Pf1N1B4_3837 at 4252.359 kb on - strand, within Pf1N1B4_3837 at 4252.413 kb on - strand, within Pf1N1B4_3837 at 4252.419 kb on + strand, within Pf1N1B4_3837 at 4252.420 kb on - strand, within Pf1N1B4_3837
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,250,413 + Pf1N1B4_3835 0.71 +0.4 4,250,414 - Pf1N1B4_3835 0.71 +0.3 4,250,414 - +0.4 4,250,414 - Pf1N1B4_3835 0.71 -0.6 4,250,414 - Pf1N1B4_3835 0.71 -3.4 4,250,414 - Pf1N1B4_3835 0.71 +0.9 4,250,668 + Pf1N1B4_3835 0.81 -0.3 4,250,722 + Pf1N1B4_3835 0.83 +0.8 4,250,722 + Pf1N1B4_3835 0.83 -1.6 4,250,722 + Pf1N1B4_3835 0.83 +1.5 4,250,722 + Pf1N1B4_3835 0.83 +0.4 4,250,722 + Pf1N1B4_3835 0.83 -0.2 4,250,722 + -1.0 4,250,722 + Pf1N1B4_3835 0.83 +1.7 4,250,723 - Pf1N1B4_3835 0.83 +0.4 4,250,723 - Pf1N1B4_3835 0.83 -1.2 4,250,723 - Pf1N1B4_3835 0.83 -0.3 4,250,723 - Pf1N1B4_3835 0.83 +1.0 4,250,798 + Pf1N1B4_3835 0.85 -0.6 4,250,798 + -1.0 4,250,798 + Pf1N1B4_3835 0.85 -0.3 4,250,799 - Pf1N1B4_3835 0.85 +0.0 4,250,799 - Pf1N1B4_3835 0.85 -0.2 4,250,799 - Pf1N1B4_3835 0.85 -0.2 4,250,851 + Pf1N1B4_3835 0.87 +0.9 4,250,851 + Pf1N1B4_3835 0.87 +0.4 4,250,852 - Pf1N1B4_3835 0.87 +0.4 4,250,852 - Pf1N1B4_3835 0.87 -1.6 4,250,852 - Pf1N1B4_3835 0.87 +2.0 4,250,852 - Pf1N1B4_3835 0.87 +0.4 4,250,852 - Pf1N1B4_3835 0.87 +0.1 4,250,852 - Pf1N1B4_3835 0.87 -0.4 4,250,854 + Pf1N1B4_3835 0.87 +0.9 4,250,854 + Pf1N1B4_3835 0.87 -0.3 4,250,854 + Pf1N1B4_3835 0.87 +0.6 4,250,854 + Pf1N1B4_3835 0.87 -1.6 4,250,855 - Pf1N1B4_3835 0.87 +2.4 4,250,855 - Pf1N1B4_3835 0.87 -0.0 4,250,882 + Pf1N1B4_3835 0.88 +0.1 4,250,882 + Pf1N1B4_3835 0.88 -1.5 4,250,882 + Pf1N1B4_3835 0.88 +0.2 4,250,882 + Pf1N1B4_3835 0.88 +0.3 4,250,883 - -0.2 4,250,883 - Pf1N1B4_3835 0.89 -1.2 4,250,884 + Pf1N1B4_3835 0.89 +0.4 4,250,884 + -0.6 4,250,884 + Pf1N1B4_3835 0.89 -0.0 4,250,884 + Pf1N1B4_3835 0.89 +0.5 4,250,884 + Pf1N1B4_3835 0.89 -1.2 4,250,884 + Pf1N1B4_3835 0.89 +0.2 4,250,884 + Pf1N1B4_3835 0.89 -2.2 4,250,884 + Pf1N1B4_3835 0.89 +0.1 4,250,884 + Pf1N1B4_3835 0.89 +2.0 4,250,884 + Pf1N1B4_3835 0.89 -0.7 4,250,884 + Pf1N1B4_3835 0.89 -0.0 4,250,884 + Pf1N1B4_3835 0.89 +0.4 4,250,884 + Pf1N1B4_3835 0.89 +0.4 4,250,884 + Pf1N1B4_3835 0.89 +2.6 4,250,884 + Pf1N1B4_3835 0.89 +0.2 4,250,884 + Pf1N1B4_3835 0.89 +1.1 4,250,885 - Pf1N1B4_3835 0.89 -0.4 4,250,885 - Pf1N1B4_3835 0.89 +0.3 4,250,885 - Pf1N1B4_3835 0.89 +0.5 4,250,885 - Pf1N1B4_3835 0.89 +0.4 4,250,885 - Pf1N1B4_3835 0.89 +2.7 4,250,885 - Pf1N1B4_3835 0.89 +0.3 4,250,885 - Pf1N1B4_3835 0.89 -1.4 4,250,885 - Pf1N1B4_3835 0.89 -1.6 4,250,885 - Pf1N1B4_3835 0.89 +0.7 4,250,885 - Pf1N1B4_3835 0.89 +1.3 4,250,885 - Pf1N1B4_3835 0.89 +0.6 4,250,885 - +0.4 4,250,885 - Pf1N1B4_3835 0.89 -0.6 4,250,885 - Pf1N1B4_3835 0.89 -0.0 4,251,010 + -0.2 4,251,059 + +1.0 4,251,060 - +1.0 4,251,269 - Pf1N1B4_3836 0.24 -0.6 4,251,269 - Pf1N1B4_3836 0.24 +0.4 4,251,342 + Pf1N1B4_3836 0.47 -0.7 4,251,343 - Pf1N1B4_3836 0.47 -2.4 4,251,702 - +0.1 4,251,722 + -2.8 4,251,722 + +1.1 4,251,723 - -0.2 4,251,723 - +0.4 4,251,723 - +0.4 4,251,764 + -0.4 4,251,765 - Pf1N1B4_3837 0.10 +0.8 4,251,845 + Pf1N1B4_3837 0.14 -0.4 4,251,845 + Pf1N1B4_3837 0.14 +0.4 4,251,845 + Pf1N1B4_3837 0.14 +0.2 4,251,845 + Pf1N1B4_3837 0.14 -3.0 4,251,845 + Pf1N1B4_3837 0.14 +0.0 4,251,845 + Pf1N1B4_3837 0.14 -2.0 4,251,846 - Pf1N1B4_3837 0.14 -1.2 4,251,846 - Pf1N1B4_3837 0.14 -0.6 4,251,846 - +0.4 4,251,846 - Pf1N1B4_3837 0.14 +0.1 4,251,846 - Pf1N1B4_3837 0.14 +0.6 4,251,846 - Pf1N1B4_3837 0.14 -0.6 4,251,846 - Pf1N1B4_3837 0.14 +0.4 4,251,874 - Pf1N1B4_3837 0.15 +0.0 4,252,181 + Pf1N1B4_3837 0.27 +0.4 4,252,181 + Pf1N1B4_3837 0.27 -0.6 4,252,181 + Pf1N1B4_3837 0.27 -0.0 4,252,182 - Pf1N1B4_3837 0.27 +0.7 4,252,182 - Pf1N1B4_3837 0.27 -1.1 4,252,252 + Pf1N1B4_3837 0.30 -1.6 4,252,259 + Pf1N1B4_3837 0.31 +1.3 4,252,259 + Pf1N1B4_3837 0.31 -1.2 4,252,259 + Pf1N1B4_3837 0.31 +0.5 4,252,259 + Pf1N1B4_3837 0.31 -0.6 4,252,259 + +0.4 4,252,259 + Pf1N1B4_3837 0.31 +0.7 4,252,259 + Pf1N1B4_3837 0.31 -1.8 4,252,259 + Pf1N1B4_3837 0.31 -0.0 4,252,260 - Pf1N1B4_3837 0.31 +0.4 4,252,260 - Pf1N1B4_3837 0.31 +0.6 4,252,260 - Pf1N1B4_3837 0.31 -0.2 4,252,260 - Pf1N1B4_3837 0.31 -0.6 4,252,260 - Pf1N1B4_3837 0.31 +1.0 4,252,260 - Pf1N1B4_3837 0.31 +2.0 4,252,356 - Pf1N1B4_3837 0.35 +2.4 4,252,358 + Pf1N1B4_3837 0.35 +1.2 4,252,358 + Pf1N1B4_3837 0.35 -0.0 4,252,358 + Pf1N1B4_3837 0.35 -1.0 4,252,358 + Pf1N1B4_3837 0.35 +0.6 4,252,358 + Pf1N1B4_3837 0.35 -0.8 4,252,359 - Pf1N1B4_3837 0.35 -2.8 4,252,359 - Pf1N1B4_3837 0.35 -0.3 4,252,413 - Pf1N1B4_3837 0.37 -1.6 4,252,419 + Pf1N1B4_3837 0.37 -1.4 4,252,420 - Pf1N1B4_3837 0.37 +0.4
Or see this region's nucleotide sequence