Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2395 and Pf1N1B4_2396 are separated by 18 nucleotides Pf1N1B4_2396 and Pf1N1B4_2397 are separated by 273 nucleotides
Pf1N1B4_2395 - S-adenosylmethionine synthetase (EC 2.5.1.6), at 2,712,971 to 2,714,161
_2395
Pf1N1B4_2396 - Transcriptional regulator, ArsR family / Methyltransferase fusion, at 2,714,180 to 2,715,175
_2396
Pf1N1B4_2397 - Transketolase (EC 2.2.1.1), at 2,715,449 to 2,717,446
_2397
Position (kb)
2714
2715
2716 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2714.243 kb on - strand at 2714.247 kb on - strand at 2714.247 kb on - strand at 2714.247 kb on - strand at 2714.247 kb on - strand at 2714.247 kb on - strand at 2714.253 kb on - strand at 2714.253 kb on - strand at 2714.253 kb on - strand at 2714.253 kb on - strand at 2714.253 kb on - strand at 2714.253 kb on - strand at 2714.253 kb on - strand at 2714.253 kb on - strand at 2714.253 kb on - strand at 2714.253 kb on - strand at 2714.257 kb on - strand at 2714.257 kb on - strand at 2714.257 kb on - strand at 2714.257 kb on - strand at 2714.257 kb on - strand at 2714.257 kb on - strand at 2714.257 kb on - strand at 2714.376 kb on - strand, within Pf1N1B4_2396 at 2714.376 kb on - strand, within Pf1N1B4_2396 at 2714.376 kb on - strand, within Pf1N1B4_2396 at 2714.376 kb on - strand, within Pf1N1B4_2396 at 2714.376 kb on - strand, within Pf1N1B4_2396 at 2714.376 kb on - strand, within Pf1N1B4_2396 at 2714.376 kb on - strand, within Pf1N1B4_2396 at 2714.376 kb on - strand, within Pf1N1B4_2396 at 2714.376 kb on - strand, within Pf1N1B4_2396 at 2714.376 kb on - strand, within Pf1N1B4_2396 at 2714.463 kb on - strand, within Pf1N1B4_2396 at 2714.463 kb on - strand, within Pf1N1B4_2396 at 2714.463 kb on - strand, within Pf1N1B4_2396 at 2714.463 kb on - strand, within Pf1N1B4_2396 at 2714.475 kb on - strand, within Pf1N1B4_2396 at 2714.475 kb on - strand, within Pf1N1B4_2396 at 2714.475 kb on - strand, within Pf1N1B4_2396 at 2714.475 kb on - strand, within Pf1N1B4_2396 at 2714.499 kb on - strand, within Pf1N1B4_2396 at 2714.715 kb on - strand, within Pf1N1B4_2396 at 2715.051 kb on - strand, within Pf1N1B4_2396 at 2715.084 kb on - strand at 2715.084 kb on - strand at 2715.084 kb on - strand at 2715.168 kb on - strand at 2715.176 kb on - strand at 2715.246 kb on + strand at 2715.266 kb on + strand at 2715.266 kb on + strand at 2715.266 kb on + strand at 2715.267 kb on - strand at 2715.272 kb on + strand at 2715.313 kb on - strand at 2715.313 kb on - strand at 2715.313 kb on - strand at 2715.313 kb on - strand at 2715.350 kb on - strand at 2715.350 kb on - strand at 2715.350 kb on - strand at 2715.350 kb on - strand at 2715.350 kb on - strand at 2715.415 kb on + strand at 2715.415 kb on + strand at 2715.415 kb on + strand at 2715.415 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,714,243 - +0.6 2,714,247 - -2.0 2,714,247 - +1.2 2,714,247 - -2.1 2,714,247 - -0.2 2,714,247 - -0.3 2,714,253 - -0.1 2,714,253 - -0.3 2,714,253 - +1.1 2,714,253 - -1.2 2,714,253 - +1.9 2,714,253 - -0.3 2,714,253 - -0.0 2,714,253 - +0.9 2,714,253 - +2.2 2,714,253 - -1.1 2,714,257 - +0.1 2,714,257 - +1.1 2,714,257 - +1.1 2,714,257 - +0.5 2,714,257 - +0.2 2,714,257 - -0.4 2,714,257 - +0.1 2,714,376 - Pf1N1B4_2396 0.20 -0.4 2,714,376 - Pf1N1B4_2396 0.20 -1.4 2,714,376 - Pf1N1B4_2396 0.20 -0.7 2,714,376 - Pf1N1B4_2396 0.20 -0.1 2,714,376 - Pf1N1B4_2396 0.20 -1.2 2,714,376 - Pf1N1B4_2396 0.20 +0.4 2,714,376 - Pf1N1B4_2396 0.20 -1.7 2,714,376 - Pf1N1B4_2396 0.20 +0.4 2,714,376 - Pf1N1B4_2396 0.20 -0.9 2,714,376 - Pf1N1B4_2396 0.20 -1.4 2,714,463 - Pf1N1B4_2396 0.28 -0.1 2,714,463 - Pf1N1B4_2396 0.28 -0.1 2,714,463 - Pf1N1B4_2396 0.28 -0.5 2,714,463 - Pf1N1B4_2396 0.28 -0.8 2,714,475 - Pf1N1B4_2396 0.30 +1.2 2,714,475 - Pf1N1B4_2396 0.30 -1.3 2,714,475 - Pf1N1B4_2396 0.30 -1.7 2,714,475 - Pf1N1B4_2396 0.30 +2.2 2,714,499 - Pf1N1B4_2396 0.32 -0.9 2,714,715 - Pf1N1B4_2396 0.54 +0.7 2,715,051 - Pf1N1B4_2396 0.87 -0.9 2,715,084 - +0.3 2,715,084 - +0.5 2,715,084 - +0.1 2,715,168 - -0.4 2,715,176 - -0.2 2,715,246 + -0.2 2,715,266 + -0.4 2,715,266 + +0.6 2,715,266 + +0.9 2,715,267 - +0.3 2,715,272 + -1.9 2,715,313 - -0.1 2,715,313 - +0.3 2,715,313 - -0.9 2,715,313 - -0.1 2,715,350 - +0.9 2,715,350 - -0.7 2,715,350 - -1.4 2,715,350 - -0.1 2,715,350 - -1.8 2,715,415 + +0.7 2,715,415 + +0.2 2,715,415 + +0.5 2,715,415 + +0.9
Or see this region's nucleotide sequence