Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1107

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1106 and Pf1N1B4_1107 are separated by 167 nucleotidesPf1N1B4_1107 and Pf1N1B4_1108 are separated by 11 nucleotides Pf1N1B4_1106 - membrane protein, putative, at 1,238,790 to 1,239,731 _1106 Pf1N1B4_1107 - D-galactarate dehydratase (EC 4.2.1.42), at 1,239,899 to 1,241,452 _1107 Pf1N1B4_1108 - D-galactarate permease, at 1,241,464 to 1,242,831 _1108 Position (kb) 1239 1240 1241 1242Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1238.947 kb on + strandat 1238.947 kb on + strand, within Pf1N1B4_1106at 1239.185 kb on - strand, within Pf1N1B4_1106at 1239.185 kb on - strand, within Pf1N1B4_1106at 1239.249 kb on - strand, within Pf1N1B4_1106at 1239.249 kb on - strand, within Pf1N1B4_1106at 1239.249 kb on - strand, within Pf1N1B4_1106at 1239.249 kb on - strand, within Pf1N1B4_1106at 1239.313 kb on + strand, within Pf1N1B4_1106at 1239.314 kb on - strand, within Pf1N1B4_1106at 1239.370 kb on + strand, within Pf1N1B4_1106at 1239.370 kb on + strand, within Pf1N1B4_1106at 1239.370 kb on + strand, within Pf1N1B4_1106at 1239.370 kb on + strandat 1239.371 kb on - strand, within Pf1N1B4_1106at 1239.433 kb on + strand, within Pf1N1B4_1106at 1239.434 kb on - strand, within Pf1N1B4_1106at 1239.434 kb on - strand, within Pf1N1B4_1106at 1239.434 kb on - strand, within Pf1N1B4_1106at 1239.434 kb on - strand, within Pf1N1B4_1106at 1239.517 kb on + strand, within Pf1N1B4_1106at 1239.517 kb on + strand, within Pf1N1B4_1106at 1239.517 kb on + strand, within Pf1N1B4_1106at 1239.517 kb on + strand, within Pf1N1B4_1106at 1239.518 kb on - strand, within Pf1N1B4_1106at 1239.518 kb on - strand, within Pf1N1B4_1106at 1239.518 kb on - strand, within Pf1N1B4_1106at 1239.518 kb on - strand, within Pf1N1B4_1106at 1239.518 kb on - strand, within Pf1N1B4_1106at 1239.518 kb on - strand, within Pf1N1B4_1106at 1239.518 kb on - strand, within Pf1N1B4_1106at 1239.621 kb on - strand, within Pf1N1B4_1106at 1239.722 kb on + strandat 1239.723 kb on - strandat 1239.900 kb on + strandat 1239.900 kb on + strandat 1239.901 kb on - strandat 1239.901 kb on - strandat 1239.901 kb on - strandat 1239.928 kb on + strandat 1239.928 kb on + strandat 1239.928 kb on + strandat 1239.928 kb on + strandat 1239.929 kb on - strandat 1239.929 kb on - strandat 1239.929 kb on - strandat 1239.929 kb on - strandat 1239.929 kb on - strandat 1239.929 kb on - strandat 1239.994 kb on - strandat 1239.994 kb on - strandat 1239.994 kb on - strandat 1239.994 kb on - strandat 1239.994 kb on - strandat 1240.417 kb on - strand, within Pf1N1B4_1107at 1240.483 kb on - strand, within Pf1N1B4_1107at 1240.557 kb on + strand, within Pf1N1B4_1107at 1240.778 kb on - strand, within Pf1N1B4_1107at 1240.896 kb on + strand, within Pf1N1B4_1107at 1240.897 kb on - strand, within Pf1N1B4_1107at 1240.897 kb on - strandat 1240.897 kb on - strand, within Pf1N1B4_1107at 1240.897 kb on - strand, within Pf1N1B4_1107at 1240.897 kb on - strandat 1240.932 kb on + strand, within Pf1N1B4_1107at 1241.418 kb on + strandat 1241.418 kb on + strandat 1241.483 kb on - strandat 1241.487 kb on + strandat 1241.487 kb on + strandat 1241.487 kb on + strandat 1241.487 kb on + strandat 1241.487 kb on + strandat 1241.487 kb on + strandat 1241.487 kb on + strandat 1241.487 kb on + strandat 1241.487 kb on + strandat 1241.488 kb on - strandat 1241.488 kb on - strandat 1241.488 kb on - strandat 1241.488 kb on - strandat 1241.488 kb on - strandat 1241.488 kb on - strandat 1241.488 kb on - strandat 1241.488 kb on - strandat 1241.488 kb on - strandat 1241.488 kb on - strandat 1241.488 kb on - strandat 1241.527 kb on + strandat 1241.561 kb on + strandat 1241.562 kb on - strandat 1241.562 kb on - strandat 1241.639 kb on + strand, within Pf1N1B4_1108at 1241.639 kb on + strand, within Pf1N1B4_1108at 1241.640 kb on - strand, within Pf1N1B4_1108at 1241.818 kb on + strand, within Pf1N1B4_1108at 1241.818 kb on + strand, within Pf1N1B4_1108at 1241.818 kb on + strand, within Pf1N1B4_1108at 1241.818 kb on + strand, within Pf1N1B4_1108at 1241.818 kb on + strand, within Pf1N1B4_1108at 1241.819 kb on - strand, within Pf1N1B4_1108at 1241.819 kb on - strand, within Pf1N1B4_1108at 1241.819 kb on - strandat 1241.822 kb on + strand, within Pf1N1B4_1108at 1241.822 kb on + strand, within Pf1N1B4_1108at 1241.822 kb on + strand, within Pf1N1B4_1108at 1241.822 kb on + strand, within Pf1N1B4_1108at 1241.822 kb on + strand, within Pf1N1B4_1108at 1241.822 kb on + strand, within Pf1N1B4_1108at 1241.822 kb on + strand, within Pf1N1B4_1108at 1241.822 kb on + strand, within Pf1N1B4_1108at 1241.822 kb on + strand, within Pf1N1B4_1108at 1241.822 kb on + strand, within Pf1N1B4_1108at 1241.822 kb on + strand, within Pf1N1B4_1108at 1241.823 kb on - strand, within Pf1N1B4_1108at 1241.823 kb on - strandat 1241.823 kb on - strand, within Pf1N1B4_1108at 1241.823 kb on - strand, within Pf1N1B4_1108at 1241.823 kb on - strand, within Pf1N1B4_1108at 1241.823 kb on - strand, within Pf1N1B4_1108at 1241.823 kb on - strand, within Pf1N1B4_1108at 1241.915 kb on + strand, within Pf1N1B4_1108at 1241.916 kb on - strand, within Pf1N1B4_1108at 1241.916 kb on - strand, within Pf1N1B4_1108at 1242.023 kb on + strand, within Pf1N1B4_1108at 1242.023 kb on + strand, within Pf1N1B4_1108at 1242.023 kb on + strand, within Pf1N1B4_1108at 1242.024 kb on - strand, within Pf1N1B4_1108at 1242.024 kb on - strand, within Pf1N1B4_1108at 1242.024 kb on - strand, within Pf1N1B4_1108at 1242.050 kb on + strand, within Pf1N1B4_1108at 1242.050 kb on + strand, within Pf1N1B4_1108at 1242.051 kb on - strand, within Pf1N1B4_1108at 1242.051 kb on - strand, within Pf1N1B4_1108at 1242.051 kb on - strand, within Pf1N1B4_1108at 1242.051 kb on - strand, within Pf1N1B4_1108at 1242.051 kb on - strand, within Pf1N1B4_1108at 1242.051 kb on - strand, within Pf1N1B4_1108at 1242.051 kb on - strandat 1242.083 kb on + strand, within Pf1N1B4_1108at 1242.084 kb on - strand, within Pf1N1B4_1108at 1242.125 kb on + strand, within Pf1N1B4_1108at 1242.125 kb on + strand, within Pf1N1B4_1108at 1242.125 kb on + strand, within Pf1N1B4_1108at 1242.125 kb on + strand, within Pf1N1B4_1108at 1242.126 kb on - strand, within Pf1N1B4_1108at 1242.126 kb on - strand, within Pf1N1B4_1108at 1242.126 kb on - strand, within Pf1N1B4_1108at 1242.126 kb on - strand, within Pf1N1B4_1108at 1242.126 kb on - strand, within Pf1N1B4_1108at 1242.251 kb on + strand, within Pf1N1B4_1108at 1242.251 kb on + strand, within Pf1N1B4_1108at 1242.251 kb on + strand, within Pf1N1B4_1108at 1242.251 kb on + strand, within Pf1N1B4_1108at 1242.252 kb on - strand, within Pf1N1B4_1108at 1242.252 kb on - strand, within Pf1N1B4_1108at 1242.377 kb on + strand, within Pf1N1B4_1108at 1242.377 kb on + strand, within Pf1N1B4_1108at 1242.377 kb on + strand, within Pf1N1B4_1108at 1242.378 kb on - strand, within Pf1N1B4_1108

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,238,947 + -0.2
1,238,947 + Pf1N1B4_1106 0.17 -1.2
1,239,185 - Pf1N1B4_1106 0.42 +1.1
1,239,185 - Pf1N1B4_1106 0.42 -0.5
1,239,249 - Pf1N1B4_1106 0.49 +0.8
1,239,249 - Pf1N1B4_1106 0.49 +1.8
1,239,249 - Pf1N1B4_1106 0.49 +0.5
1,239,249 - Pf1N1B4_1106 0.49 +1.8
1,239,313 + Pf1N1B4_1106 0.56 +0.8
1,239,314 - Pf1N1B4_1106 0.56 -0.2
1,239,370 + Pf1N1B4_1106 0.62 +0.4
1,239,370 + Pf1N1B4_1106 0.62 -0.8
1,239,370 + Pf1N1B4_1106 0.62 +0.1
1,239,370 + +0.8
1,239,371 - Pf1N1B4_1106 0.62 +0.8
1,239,433 + Pf1N1B4_1106 0.68 -0.3
1,239,434 - Pf1N1B4_1106 0.68 +0.7
1,239,434 - Pf1N1B4_1106 0.68 +1.8
1,239,434 - Pf1N1B4_1106 0.68 -0.2
1,239,434 - Pf1N1B4_1106 0.68 +0.6
1,239,517 + Pf1N1B4_1106 0.77 +0.2
1,239,517 + Pf1N1B4_1106 0.77 +0.6
1,239,517 + Pf1N1B4_1106 0.77 +1.4
1,239,517 + Pf1N1B4_1106 0.77 +1.2
1,239,518 - Pf1N1B4_1106 0.77 -0.5
1,239,518 - Pf1N1B4_1106 0.77 +0.2
1,239,518 - Pf1N1B4_1106 0.77 -0.4
1,239,518 - Pf1N1B4_1106 0.77 +1.4
1,239,518 - Pf1N1B4_1106 0.77 -0.2
1,239,518 - Pf1N1B4_1106 0.77 +0.2
1,239,518 - Pf1N1B4_1106 0.77 -0.6
1,239,621 - Pf1N1B4_1106 0.88 +0.8
1,239,722 + +0.6
1,239,723 - +1.0
1,239,900 + +0.6
1,239,900 + -1.4
1,239,901 - +0.1
1,239,901 - -0.1
1,239,901 - +0.9
1,239,928 + -0.5
1,239,928 + -2.4
1,239,928 + -2.7
1,239,928 + -1.5
1,239,929 - -1.2
1,239,929 - -0.8
1,239,929 - -2.0
1,239,929 - -1.8
1,239,929 - -1.0
1,239,929 - -0.5
1,239,994 - -0.3
1,239,994 - +0.2
1,239,994 - +1.1
1,239,994 - +1.4
1,239,994 - -0.2
1,240,417 - Pf1N1B4_1107 0.33 -0.9
1,240,483 - Pf1N1B4_1107 0.38 -0.5
1,240,557 + Pf1N1B4_1107 0.42 -1.2
1,240,778 - Pf1N1B4_1107 0.57 -0.4
1,240,896 + Pf1N1B4_1107 0.64 -0.9
1,240,897 - Pf1N1B4_1107 0.64 -2.2
1,240,897 - -0.2
1,240,897 - Pf1N1B4_1107 0.64 +0.6
1,240,897 - Pf1N1B4_1107 0.64 -1.7
1,240,897 - -0.2
1,240,932 + Pf1N1B4_1107 0.66 +0.8
1,241,418 + -0.7
1,241,418 + +1.1
1,241,483 - -0.8
1,241,487 + -0.2
1,241,487 + -1.1
1,241,487 + -0.7
1,241,487 + -0.4
1,241,487 + +0.6
1,241,487 + +0.4
1,241,487 + -0.1
1,241,487 + +1.3
1,241,487 + +0.1
1,241,488 - -1.2
1,241,488 - +0.4
1,241,488 - -0.2
1,241,488 - -1.5
1,241,488 - +0.8
1,241,488 - +0.5
1,241,488 - -0.1
1,241,488 - +0.8
1,241,488 - +1.6
1,241,488 - -1.2
1,241,488 - -0.2
1,241,527 + +0.4
1,241,561 + +0.2
1,241,562 - -0.2
1,241,562 - +0.4
1,241,639 + Pf1N1B4_1108 0.13 +0.1
1,241,639 + Pf1N1B4_1108 0.13 +2.2
1,241,640 - Pf1N1B4_1108 0.13 +0.4
1,241,818 + Pf1N1B4_1108 0.26 +1.1
1,241,818 + Pf1N1B4_1108 0.26 -0.6
1,241,818 + Pf1N1B4_1108 0.26 -0.4
1,241,818 + Pf1N1B4_1108 0.26 -0.6
1,241,818 + Pf1N1B4_1108 0.26 -0.8
1,241,819 - Pf1N1B4_1108 0.26 +1.8
1,241,819 - Pf1N1B4_1108 0.26 -1.8
1,241,819 - -1.5
1,241,822 + Pf1N1B4_1108 0.26 -0.1
1,241,822 + Pf1N1B4_1108 0.26 +0.8
1,241,822 + Pf1N1B4_1108 0.26 -0.5
1,241,822 + Pf1N1B4_1108 0.26 -1.2
1,241,822 + Pf1N1B4_1108 0.26 +3.2
1,241,822 + Pf1N1B4_1108 0.26 +0.3
1,241,822 + Pf1N1B4_1108 0.26 -2.2
1,241,822 + Pf1N1B4_1108 0.26 +1.4
1,241,822 + Pf1N1B4_1108 0.26 -0.8
1,241,822 + Pf1N1B4_1108 0.26 +0.2
1,241,822 + Pf1N1B4_1108 0.26 -0.2
1,241,823 - Pf1N1B4_1108 0.26 +0.4
1,241,823 - +1.4
1,241,823 - Pf1N1B4_1108 0.26 +1.5
1,241,823 - Pf1N1B4_1108 0.26 -0.6
1,241,823 - Pf1N1B4_1108 0.26 -1.8
1,241,823 - Pf1N1B4_1108 0.26 -1.2
1,241,823 - Pf1N1B4_1108 0.26 -1.6
1,241,915 + Pf1N1B4_1108 0.33 -1.0
1,241,916 - Pf1N1B4_1108 0.33 -2.5
1,241,916 - Pf1N1B4_1108 0.33 -0.0
1,242,023 + Pf1N1B4_1108 0.41 -0.2
1,242,023 + Pf1N1B4_1108 0.41 +1.4
1,242,023 + Pf1N1B4_1108 0.41 -0.8
1,242,024 - Pf1N1B4_1108 0.41 +0.8
1,242,024 - Pf1N1B4_1108 0.41 -0.5
1,242,024 - Pf1N1B4_1108 0.41 +1.5
1,242,050 + Pf1N1B4_1108 0.43 +0.2
1,242,050 + Pf1N1B4_1108 0.43 +0.3
1,242,051 - Pf1N1B4_1108 0.43 +1.1
1,242,051 - Pf1N1B4_1108 0.43 +1.8
1,242,051 - Pf1N1B4_1108 0.43 -0.1
1,242,051 - Pf1N1B4_1108 0.43 -0.1
1,242,051 - Pf1N1B4_1108 0.43 -2.1
1,242,051 - Pf1N1B4_1108 0.43 +1.0
1,242,051 - +0.8
1,242,083 + Pf1N1B4_1108 0.45 +0.5
1,242,084 - Pf1N1B4_1108 0.45 -0.8
1,242,125 + Pf1N1B4_1108 0.48 +0.1
1,242,125 + Pf1N1B4_1108 0.48 +0.1
1,242,125 + Pf1N1B4_1108 0.48 -0.8
1,242,125 + Pf1N1B4_1108 0.48 -0.2
1,242,126 - Pf1N1B4_1108 0.48 +0.1
1,242,126 - Pf1N1B4_1108 0.48 +0.5
1,242,126 - Pf1N1B4_1108 0.48 +0.6
1,242,126 - Pf1N1B4_1108 0.48 -1.8
1,242,126 - Pf1N1B4_1108 0.48 +2.5
1,242,251 + Pf1N1B4_1108 0.58 -0.2
1,242,251 + Pf1N1B4_1108 0.58 -0.5
1,242,251 + Pf1N1B4_1108 0.58 -1.8
1,242,251 + Pf1N1B4_1108 0.58 -0.5
1,242,252 - Pf1N1B4_1108 0.58 +0.1
1,242,252 - Pf1N1B4_1108 0.58 -0.8
1,242,377 + Pf1N1B4_1108 0.67 -1.0
1,242,377 + Pf1N1B4_1108 0.67 +1.5
1,242,377 + Pf1N1B4_1108 0.67 +0.2
1,242,378 - Pf1N1B4_1108 0.67 -0.8

Or see this region's nucleotide sequence