Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS23780

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS23775 and HSERO_RS23780 are separated by 135 nucleotidesHSERO_RS23780 and HSERO_RS23785 are separated by 120 nucleotides HSERO_RS23775: HSERO_RS23775 - membrane protein, at 5,448,127 to 5,449,059 _RS23775 HSERO_RS23780: HSERO_RS23780 - dioxygenase, at 5,449,195 to 5,450,025 _RS23780 HSERO_RS23785: HSERO_RS23785 - N5,N10-methylene tetrahydromethanopterin reductase, at 5,450,146 to 5,451,525 _RS23785 Position (kb) 5449 5450 5451Strain fitness (log2 ratio) -2 -1 0 1 2at 5448.430 kb on + strand, within HSERO_RS23775at 5448.451 kb on - strand, within HSERO_RS23775at 5448.469 kb on - strand, within HSERO_RS23775at 5448.489 kb on + strand, within HSERO_RS23775at 5448.494 kb on + strand, within HSERO_RS23775at 5448.494 kb on + strand, within HSERO_RS23775at 5448.502 kb on - strand, within HSERO_RS23775at 5448.502 kb on - strand, within HSERO_RS23775at 5448.514 kb on - strand, within HSERO_RS23775at 5448.530 kb on + strand, within HSERO_RS23775at 5448.539 kb on + strand, within HSERO_RS23775at 5448.562 kb on - strand, within HSERO_RS23775at 5448.631 kb on - strand, within HSERO_RS23775at 5448.713 kb on - strand, within HSERO_RS23775at 5448.793 kb on + strand, within HSERO_RS23775at 5448.794 kb on + strand, within HSERO_RS23775at 5448.794 kb on + strand, within HSERO_RS23775at 5448.802 kb on - strand, within HSERO_RS23775at 5448.863 kb on + strand, within HSERO_RS23775at 5448.898 kb on + strand, within HSERO_RS23775at 5448.922 kb on + strandat 5448.945 kb on - strand, within HSERO_RS23775at 5448.976 kb on + strandat 5448.984 kb on - strandat 5448.984 kb on - strandat 5449.132 kb on - strandat 5449.282 kb on + strand, within HSERO_RS23780at 5449.291 kb on - strand, within HSERO_RS23780at 5449.335 kb on - strand, within HSERO_RS23780at 5449.337 kb on - strand, within HSERO_RS23780at 5449.363 kb on + strand, within HSERO_RS23780at 5449.581 kb on - strand, within HSERO_RS23780at 5449.588 kb on + strand, within HSERO_RS23780at 5449.596 kb on - strand, within HSERO_RS23780at 5449.692 kb on - strand, within HSERO_RS23780at 5449.724 kb on + strand, within HSERO_RS23780at 5449.724 kb on + strand, within HSERO_RS23780at 5449.732 kb on - strand, within HSERO_RS23780at 5449.732 kb on - strand, within HSERO_RS23780at 5449.779 kb on + strand, within HSERO_RS23780at 5449.837 kb on - strand, within HSERO_RS23780at 5449.868 kb on + strand, within HSERO_RS23780at 5449.906 kb on + strand, within HSERO_RS23780at 5449.909 kb on - strand, within HSERO_RS23780at 5449.953 kb on + strandat 5449.956 kb on - strandat 5450.004 kb on - strandat 5450.012 kb on - strandat 5450.107 kb on - strandat 5450.134 kb on + strandat 5450.206 kb on + strandat 5450.270 kb on - strandat 5450.343 kb on + strand, within HSERO_RS23785at 5450.343 kb on + strand, within HSERO_RS23785at 5450.385 kb on - strand, within HSERO_RS23785at 5450.385 kb on - strand, within HSERO_RS23785at 5450.464 kb on - strand, within HSERO_RS23785at 5450.476 kb on - strand, within HSERO_RS23785at 5450.524 kb on - strand, within HSERO_RS23785at 5450.641 kb on + strand, within HSERO_RS23785at 5450.729 kb on + strand, within HSERO_RS23785at 5450.811 kb on + strandat 5450.811 kb on + strand, within HSERO_RS23785at 5450.817 kb on + strand, within HSERO_RS23785at 5450.868 kb on + strand, within HSERO_RS23785at 5450.894 kb on + strand, within HSERO_RS23785at 5450.950 kb on + strand, within HSERO_RS23785at 5451.013 kb on - strand, within HSERO_RS23785

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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5,448,430 + HSERO_RS23775 0.32 -0.4
5,448,451 - HSERO_RS23775 0.35 -0.2
5,448,469 - HSERO_RS23775 0.37 +0.4
5,448,489 + HSERO_RS23775 0.39 -0.4
5,448,494 + HSERO_RS23775 0.39 -0.9
5,448,494 + HSERO_RS23775 0.39 -0.7
5,448,502 - HSERO_RS23775 0.40 +0.5
5,448,502 - HSERO_RS23775 0.40 +0.1
5,448,514 - HSERO_RS23775 0.41 -0.2
5,448,530 + HSERO_RS23775 0.43 -0.4
5,448,539 + HSERO_RS23775 0.44 +0.1
5,448,562 - HSERO_RS23775 0.47 -0.2
5,448,631 - HSERO_RS23775 0.54 -0.5
5,448,713 - HSERO_RS23775 0.63 +0.4
5,448,793 + HSERO_RS23775 0.71 +0.3
5,448,794 + HSERO_RS23775 0.71 +2.5
5,448,794 + HSERO_RS23775 0.71 +0.1
5,448,802 - HSERO_RS23775 0.72 -0.7
5,448,863 + HSERO_RS23775 0.79 +0.4
5,448,898 + HSERO_RS23775 0.83 -0.5
5,448,922 + +2.2
5,448,945 - HSERO_RS23775 0.88 +0.3
5,448,976 + +0.3
5,448,984 - +0.7
5,448,984 - +0.4
5,449,132 - +0.0
5,449,282 + HSERO_RS23780 0.10 -0.7
5,449,291 - HSERO_RS23780 0.12 -1.0
5,449,335 - HSERO_RS23780 0.17 -0.1
5,449,337 - HSERO_RS23780 0.17 +0.6
5,449,363 + HSERO_RS23780 0.20 +0.1
5,449,581 - HSERO_RS23780 0.46 +1.0
5,449,588 + HSERO_RS23780 0.47 -0.2
5,449,596 - HSERO_RS23780 0.48 +0.1
5,449,692 - HSERO_RS23780 0.60 +0.0
5,449,724 + HSERO_RS23780 0.64 +1.2
5,449,724 + HSERO_RS23780 0.64 +0.3
5,449,732 - HSERO_RS23780 0.65 +0.1
5,449,732 - HSERO_RS23780 0.65 -0.3
5,449,779 + HSERO_RS23780 0.70 +0.3
5,449,837 - HSERO_RS23780 0.77 -0.7
5,449,868 + HSERO_RS23780 0.81 -0.9
5,449,906 + HSERO_RS23780 0.86 +1.2
5,449,909 - HSERO_RS23780 0.86 -0.2
5,449,953 + -0.4
5,449,956 - +0.5
5,450,004 - -0.4
5,450,012 - +0.2
5,450,107 - +0.1
5,450,134 + -0.4
5,450,206 + -0.5
5,450,270 - +0.1
5,450,343 + HSERO_RS23785 0.14 +0.4
5,450,343 + HSERO_RS23785 0.14 +0.2
5,450,385 - HSERO_RS23785 0.17 +0.1
5,450,385 - HSERO_RS23785 0.17 +0.9
5,450,464 - HSERO_RS23785 0.23 -0.0
5,450,476 - HSERO_RS23785 0.24 +0.1
5,450,524 - HSERO_RS23785 0.27 +0.0
5,450,641 + HSERO_RS23785 0.36 -0.4
5,450,729 + HSERO_RS23785 0.42 -1.2
5,450,811 + -2.4
5,450,811 + HSERO_RS23785 0.48 +0.4
5,450,817 + HSERO_RS23785 0.49 +0.5
5,450,868 + HSERO_RS23785 0.52 -0.0
5,450,894 + HSERO_RS23785 0.54 -0.1
5,450,950 + HSERO_RS23785 0.58 +0.7
5,451,013 - HSERO_RS23785 0.63 -0.1

Or see this region's nucleotide sequence