Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01730 and HSERO_RS01735 are separated by 8 nucleotides HSERO_RS01735 and HSERO_RS01740 overlap by 1 nucleotides HSERO_RS01740 and HSERO_RS01745 are separated by 36 nucleotides HSERO_RS01745 and HSERO_RS01750 are separated by 29 nucleotides
HSERO_RS01730: HSERO_RS01730 - N-acetylglutamate synthase, at 386,389 to 387,624
_RS01730
HSERO_RS01735: HSERO_RS01735 - ATPase AAA, at 387,633 to 388,508
_RS01735
HSERO_RS01740: HSERO_RS01740 - CTP pyrophosphohydrolase, at 388,508 to 388,951
_RS01740
HSERO_RS01745: HSERO_RS01745 - hypothetical protein, at 388,988 to 389,173
_RS01745
HSERO_RS01750: HSERO_RS01750 - hypothetical protein, at 389,203 to 389,958
_RS01750
Position (kb) 387
388
389 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 387.790 kb on - strand, within HSERO_RS01735 at 387.952 kb on - strand, within HSERO_RS01735 at 387.955 kb on + strand, within HSERO_RS01735 at 387.955 kb on + strand, within HSERO_RS01735 at 388.030 kb on + strand, within HSERO_RS01735 at 388.033 kb on - strand, within HSERO_RS01735 at 388.095 kb on - strand, within HSERO_RS01735 at 388.095 kb on - strand, within HSERO_RS01735 at 388.095 kb on - strand, within HSERO_RS01735 at 388.236 kb on - strand, within HSERO_RS01735 at 388.427 kb on - strand at 388.497 kb on + strand at 388.505 kb on - strand at 388.515 kb on - strand at 388.660 kb on + strand, within HSERO_RS01740 at 388.691 kb on - strand, within HSERO_RS01740 at 388.851 kb on - strand, within HSERO_RS01740 at 388.853 kb on + strand, within HSERO_RS01740 at 388.991 kb on + strand at 389.366 kb on - strand, within HSERO_RS01750
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 387,790 - HSERO_RS01735 0.18 -1.4 387,952 - HSERO_RS01735 0.36 -1.8 387,955 + HSERO_RS01735 0.37 -1.3 387,955 + HSERO_RS01735 0.37 -1.8 388,030 + HSERO_RS01735 0.45 -1.7 388,033 - HSERO_RS01735 0.46 -2.9 388,095 - HSERO_RS01735 0.53 -3.0 388,095 - HSERO_RS01735 0.53 -1.4 388,095 - HSERO_RS01735 0.53 -2.4 388,236 - HSERO_RS01735 0.69 -2.7 388,427 - -2.4 388,497 + -1.9 388,505 - -4.1 388,515 - +0.2 388,660 + HSERO_RS01740 0.34 -2.5 388,691 - HSERO_RS01740 0.41 -0.4 388,851 - HSERO_RS01740 0.77 +0.2 388,853 + HSERO_RS01740 0.78 +0.2 388,991 + +0.1 389,366 - HSERO_RS01750 0.22 +0.4
Or see this region's nucleotide sequence