Experiment: PYE with Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01769 and CCNA_01770 are separated by 96 nucleotides CCNA_01770 and CCNA_01771 overlap by 4 nucleotides CCNA_01771 and CCNA_01772 are separated by 104 nucleotides CCNA_01772 and CCNA_01773 overlap by 4 nucleotides CCNA_01773 and CCNA_01774 are separated by 78 nucleotides
CCNA_01769: CCNA_01769 - ABC transporter ATP-binding protein, at 1,896,310 to 1,898,175
_01769
CCNA_01770: CCNA_01770 - nucleoside diphosphate kinase, at 1,898,272 to 1,898,691
_01770
CCNA_01771: CCNA_01771 - hypothetical protein, at 1,898,688 to 1,898,930
_01771
CCNA_01772: CCNA_01772 - hypothetical protein, at 1,899,035 to 1,899,412
_01772
CCNA_01773: CCNA_01773 - SNARE-associated family membrane protein, at 1,899,409 to 1,900,026
_01773
CCNA_01774: CCNA_01774 - phosphoribosylglycinamide formyltransferase, at 1,900,105 to 1,900,686
_01774
Position (kb)
1899
1900 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1898.039 kb on + strand at 1898.047 kb on - strand at 1898.087 kb on + strand at 1898.095 kb on - strand at 1898.113 kb on - strand at 1898.851 kb on + strand, within CCNA_01771 at 1898.949 kb on + strand at 1898.950 kb on + strand at 1898.961 kb on + strand at 1898.984 kb on + strand at 1898.987 kb on - strand at 1899.013 kb on + strand at 1899.030 kb on + strand at 1899.035 kb on - strand at 1899.171 kb on + strand, within CCNA_01772 at 1899.179 kb on - strand, within CCNA_01772 at 1899.179 kb on - strand, within CCNA_01772 at 1899.202 kb on + strand, within CCNA_01772 at 1899.220 kb on - strand, within CCNA_01772 at 1899.269 kb on + strand, within CCNA_01772 at 1899.274 kb on + strand, within CCNA_01772 at 1899.274 kb on + strand, within CCNA_01772 at 1899.282 kb on - strand, within CCNA_01772 at 1899.282 kb on - strand, within CCNA_01772 at 1899.282 kb on - strand, within CCNA_01772 at 1899.284 kb on + strand, within CCNA_01772 at 1899.292 kb on - strand, within CCNA_01772 at 1899.292 kb on - strand, within CCNA_01772 at 1899.329 kb on - strand, within CCNA_01772 at 1899.387 kb on - strand at 1899.387 kb on - strand at 1899.407 kb on + strand at 1899.407 kb on + strand at 1899.412 kb on + strand at 1899.415 kb on - strand at 1899.415 kb on - strand at 1899.415 kb on - strand at 1899.420 kb on - strand at 1899.420 kb on - strand at 1899.420 kb on - strand at 1899.525 kb on - strand, within CCNA_01773 at 1899.563 kb on + strand, within CCNA_01773 at 1899.563 kb on + strand, within CCNA_01773 at 1899.571 kb on - strand, within CCNA_01773 at 1899.616 kb on - strand, within CCNA_01773 at 1899.619 kb on + strand, within CCNA_01773 at 1899.627 kb on - strand, within CCNA_01773 at 1899.634 kb on + strand, within CCNA_01773 at 1899.641 kb on - strand, within CCNA_01773 at 1899.711 kb on + strand, within CCNA_01773 at 1899.729 kb on + strand, within CCNA_01773 at 1899.785 kb on - strand, within CCNA_01773 at 1899.819 kb on + strand, within CCNA_01773 at 1899.835 kb on - strand, within CCNA_01773 at 1899.840 kb on - strand, within CCNA_01773 at 1899.850 kb on - strand, within CCNA_01773 at 1899.850 kb on - strand, within CCNA_01773 at 1899.891 kb on + strand, within CCNA_01773 at 1899.891 kb on + strand, within CCNA_01773 at 1899.925 kb on + strand, within CCNA_01773 at 1899.936 kb on + strand, within CCNA_01773 at 1899.943 kb on - strand, within CCNA_01773 at 1899.953 kb on - strand at 1900.003 kb on + strand at 1900.031 kb on + strand at 1900.096 kb on - strand at 1900.115 kb on + strand at 1900.133 kb on - strand at 1900.277 kb on + strand, within CCNA_01774 at 1900.352 kb on + strand, within CCNA_01774 at 1900.371 kb on + strand, within CCNA_01774
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Thallium(I) acetate 0.002 mg/ml remove 1,898,039 + -2.0 1,898,047 - +2.0 1,898,087 + -0.3 1,898,095 - +0.2 1,898,113 - -0.2 1,898,851 + CCNA_01771 0.67 -2.1 1,898,949 + +1.1 1,898,950 + +0.3 1,898,961 + -2.0 1,898,984 + -1.0 1,898,987 - -1.6 1,899,013 + +0.2 1,899,030 + +0.1 1,899,035 - -1.5 1,899,171 + CCNA_01772 0.36 -2.0 1,899,179 - CCNA_01772 0.38 +0.2 1,899,179 - CCNA_01772 0.38 -1.9 1,899,202 + CCNA_01772 0.44 -1.4 1,899,220 - CCNA_01772 0.49 -1.1 1,899,269 + CCNA_01772 0.62 +0.6 1,899,274 + CCNA_01772 0.63 -0.1 1,899,274 + CCNA_01772 0.63 -1.2 1,899,282 - CCNA_01772 0.65 +0.2 1,899,282 - CCNA_01772 0.65 +0.5 1,899,282 - CCNA_01772 0.65 -1.3 1,899,284 + CCNA_01772 0.66 +0.4 1,899,292 - CCNA_01772 0.68 -0.8 1,899,292 - CCNA_01772 0.68 -1.4 1,899,329 - CCNA_01772 0.78 -1.5 1,899,387 - -1.8 1,899,387 - -0.3 1,899,407 + +1.0 1,899,407 + +1.0 1,899,412 + -0.8 1,899,415 - -0.2 1,899,415 - -0.4 1,899,415 - -0.6 1,899,420 - -0.7 1,899,420 - -0.9 1,899,420 - +0.1 1,899,525 - CCNA_01773 0.19 +0.3 1,899,563 + CCNA_01773 0.25 +1.0 1,899,563 + CCNA_01773 0.25 -1.3 1,899,571 - CCNA_01773 0.26 +1.1 1,899,616 - CCNA_01773 0.33 -1.5 1,899,619 + CCNA_01773 0.34 +0.6 1,899,627 - CCNA_01773 0.35 +0.1 1,899,634 + CCNA_01773 0.36 +0.6 1,899,641 - CCNA_01773 0.38 -1.5 1,899,711 + CCNA_01773 0.49 -0.1 1,899,729 + CCNA_01773 0.52 -1.3 1,899,785 - CCNA_01773 0.61 -0.8 1,899,819 + CCNA_01773 0.66 +2.2 1,899,835 - CCNA_01773 0.69 +0.3 1,899,840 - CCNA_01773 0.70 +1.1 1,899,850 - CCNA_01773 0.71 +1.4 1,899,850 - CCNA_01773 0.71 +0.3 1,899,891 + CCNA_01773 0.78 -0.9 1,899,891 + CCNA_01773 0.78 -2.2 1,899,925 + CCNA_01773 0.83 -1.6 1,899,936 + CCNA_01773 0.85 +0.5 1,899,943 - CCNA_01773 0.86 -0.5 1,899,953 - +1.0 1,900,003 + -0.8 1,900,031 + -1.6 1,900,096 - +1.0 1,900,115 + +2.7 1,900,133 - +0.5 1,900,277 + CCNA_01774 0.30 -1.2 1,900,352 + CCNA_01774 0.42 -0.3 1,900,371 + CCNA_01774 0.46 +0.0
Or see this region's nucleotide sequence