Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00585

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00585 and CA265_RS00590 are separated by 74 nucleotides CA265_RS00585: CA265_RS00585 - translocation/assembly module TamB, at 130,429 to 134,859 _RS00585 CA265_RS00590: CA265_RS00590 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 134,934 to 135,935 _RS00590 Position (kb) 130 131 132 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 129.440 kb on + strandat 129.455 kb on - strandat 129.455 kb on - strandat 129.513 kb on + strandat 129.517 kb on - strandat 129.539 kb on + strandat 129.543 kb on - strandat 129.547 kb on + strandat 129.653 kb on - strandat 129.705 kb on - strandat 129.708 kb on - strandat 129.750 kb on + strandat 129.751 kb on - strandat 129.801 kb on - strandat 129.801 kb on - strandat 130.220 kb on + strandat 130.283 kb on - strandat 130.344 kb on - strandat 130.363 kb on + strandat 130.430 kb on + strandat 130.431 kb on - strandat 130.431 kb on - strandat 130.474 kb on - strandat 130.474 kb on - strandat 130.494 kb on + strandat 130.647 kb on + strandat 130.659 kb on + strandat 130.659 kb on + strandat 130.660 kb on - strandat 130.660 kb on - strandat 130.660 kb on - strandat 130.736 kb on - strandat 130.803 kb on + strandat 130.807 kb on - strandat 130.807 kb on - strandat 130.861 kb on + strandat 131.054 kb on - strand, within CA265_RS00585at 131.054 kb on - strand, within CA265_RS00585at 131.058 kb on - strand, within CA265_RS00585at 131.079 kb on + strand, within CA265_RS00585at 131.141 kb on - strand, within CA265_RS00585at 131.153 kb on - strand, within CA265_RS00585at 131.210 kb on + strand, within CA265_RS00585at 131.210 kb on + strand, within CA265_RS00585at 131.240 kb on + strand, within CA265_RS00585at 131.240 kb on + strand, within CA265_RS00585at 131.242 kb on + strand, within CA265_RS00585at 131.242 kb on + strand, within CA265_RS00585at 131.243 kb on - strand, within CA265_RS00585at 131.243 kb on - strand, within CA265_RS00585at 131.243 kb on - strand, within CA265_RS00585at 131.243 kb on - strand, within CA265_RS00585at 131.243 kb on - strand, within CA265_RS00585at 131.243 kb on - strand, within CA265_RS00585at 131.371 kb on - strand, within CA265_RS00585at 131.431 kb on - strand, within CA265_RS00585at 131.460 kb on + strand, within CA265_RS00585at 131.461 kb on - strand, within CA265_RS00585at 131.464 kb on + strand, within CA265_RS00585at 131.464 kb on + strand, within CA265_RS00585at 131.465 kb on - strand, within CA265_RS00585at 131.465 kb on - strand, within CA265_RS00585at 131.545 kb on + strand, within CA265_RS00585at 131.564 kb on - strand, within CA265_RS00585at 131.650 kb on - strand, within CA265_RS00585at 131.652 kb on + strand, within CA265_RS00585at 131.674 kb on - strand, within CA265_RS00585at 131.720 kb on + strand, within CA265_RS00585at 131.745 kb on + strand, within CA265_RS00585at 131.749 kb on + strand, within CA265_RS00585at 131.799 kb on + strand, within CA265_RS00585at 131.800 kb on - strand, within CA265_RS00585at 131.800 kb on - strand, within CA265_RS00585at 131.809 kb on + strand, within CA265_RS00585at 131.809 kb on + strand, within CA265_RS00585at 131.816 kb on - strand, within CA265_RS00585at 131.904 kb on + strand, within CA265_RS00585at 131.918 kb on + strand, within CA265_RS00585at 131.919 kb on - strand, within CA265_RS00585at 131.919 kb on - strand, within CA265_RS00585at 131.919 kb on - strand, within CA265_RS00585at 131.919 kb on - strand, within CA265_RS00585at 131.959 kb on + strand, within CA265_RS00585at 132.148 kb on - strand, within CA265_RS00585at 132.190 kb on + strand, within CA265_RS00585at 132.247 kb on - strand, within CA265_RS00585at 132.247 kb on - strand, within CA265_RS00585at 132.301 kb on + strand, within CA265_RS00585at 132.313 kb on + strand, within CA265_RS00585at 132.475 kb on + strand, within CA265_RS00585at 132.487 kb on - strand, within CA265_RS00585at 132.523 kb on + strand, within CA265_RS00585at 132.555 kb on + strand, within CA265_RS00585at 132.577 kb on + strand, within CA265_RS00585at 132.724 kb on - strand, within CA265_RS00585at 132.735 kb on + strand, within CA265_RS00585at 132.808 kb on - strand, within CA265_RS00585at 132.810 kb on + strandat 132.811 kb on - strand, within CA265_RS00585at 132.811 kb on - strand, within CA265_RS00585at 132.917 kb on - strand, within CA265_RS00585at 132.932 kb on - strand, within CA265_RS00585at 132.937 kb on + strand, within CA265_RS00585at 133.032 kb on - strand, within CA265_RS00585at 133.053 kb on - strand, within CA265_RS00585at 133.080 kb on - strand, within CA265_RS00585at 133.103 kb on - strand, within CA265_RS00585at 133.126 kb on + strand, within CA265_RS00585at 133.156 kb on + strand, within CA265_RS00585at 133.220 kb on - strand, within CA265_RS00585at 133.234 kb on - strand, within CA265_RS00585at 133.316 kb on - strand, within CA265_RS00585at 133.498 kb on - strand, within CA265_RS00585at 133.499 kb on + strand, within CA265_RS00585at 133.500 kb on - strand, within CA265_RS00585at 133.562 kb on + strand, within CA265_RS00585at 133.562 kb on + strand, within CA265_RS00585at 133.562 kb on + strand, within CA265_RS00585at 133.562 kb on + strand, within CA265_RS00585at 133.563 kb on - strand, within CA265_RS00585at 133.563 kb on - strandat 133.563 kb on - strand, within CA265_RS00585at 133.695 kb on + strand, within CA265_RS00585at 133.695 kb on + strand, within CA265_RS00585at 133.724 kb on + strand, within CA265_RS00585at 133.725 kb on - strand, within CA265_RS00585at 133.770 kb on + strand, within CA265_RS00585at 133.771 kb on - strand, within CA265_RS00585at 133.938 kb on + strand, within CA265_RS00585at 133.963 kb on + strand, within CA265_RS00585at 133.983 kb on + strand, within CA265_RS00585at 133.984 kb on - strand, within CA265_RS00585at 134.118 kb on + strand, within CA265_RS00585at 134.118 kb on + strand, within CA265_RS00585at 134.119 kb on - strand, within CA265_RS00585at 134.122 kb on + strand, within CA265_RS00585at 134.122 kb on + strand, within CA265_RS00585at 134.122 kb on + strand, within CA265_RS00585at 134.127 kb on - strand, within CA265_RS00585at 134.127 kb on - strand, within CA265_RS00585at 134.169 kb on - strand, within CA265_RS00585at 134.233 kb on + strand, within CA265_RS00585at 134.373 kb on + strand, within CA265_RS00585at 134.374 kb on - strand, within CA265_RS00585at 134.418 kb on - strandat 134.442 kb on - strandat 134.463 kb on + strandat 134.474 kb on + strandat 134.475 kb on - strandat 134.475 kb on - strandat 134.497 kb on + strandat 134.508 kb on + strandat 134.523 kb on - strandat 134.528 kb on - strandat 134.553 kb on + strandat 134.623 kb on - strandat 134.641 kb on - strandat 134.702 kb on - strandat 134.734 kb on - strandat 134.767 kb on - strandat 134.783 kb on + strandat 134.783 kb on + strandat 134.783 kb on + strandat 134.784 kb on - strandat 134.864 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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129,440 + -0.1
129,455 - -0.7
129,455 - -0.1
129,513 + -0.0
129,517 - +0.4
129,539 + +0.5
129,543 - +0.9
129,547 + +0.6
129,653 - -0.2
129,705 - -0.0
129,708 - +0.1
129,750 + -1.1
129,751 - -0.1
129,801 - +0.1
129,801 - -1.9
130,220 + -0.4
130,283 - -2.0
130,344 - +0.6
130,363 + -0.1
130,430 + +0.5
130,431 - +2.5
130,431 - -0.8
130,474 - +0.3
130,474 - -0.7
130,494 + -0.6
130,647 + -0.1
130,659 + +0.5
130,659 + +1.2
130,660 - +0.2
130,660 - +0.5
130,660 - +0.0
130,736 - +1.7
130,803 + -0.2
130,807 - -0.9
130,807 - -0.2
130,861 + +0.3
131,054 - CA265_RS00585 0.14 +0.4
131,054 - CA265_RS00585 0.14 -0.2
131,058 - CA265_RS00585 0.14 +2.0
131,079 + CA265_RS00585 0.15 +0.7
131,141 - CA265_RS00585 0.16 -1.4
131,153 - CA265_RS00585 0.16 +0.0
131,210 + CA265_RS00585 0.18 +0.6
131,210 + CA265_RS00585 0.18 +0.0
131,240 + CA265_RS00585 0.18 -1.3
131,240 + CA265_RS00585 0.18 +0.7
131,242 + CA265_RS00585 0.18 +0.9
131,242 + CA265_RS00585 0.18 +0.2
131,243 - CA265_RS00585 0.18 -0.4
131,243 - CA265_RS00585 0.18 +0.2
131,243 - CA265_RS00585 0.18 +0.1
131,243 - CA265_RS00585 0.18 -0.4
131,243 - CA265_RS00585 0.18 +0.1
131,243 - CA265_RS00585 0.18 -0.0
131,371 - CA265_RS00585 0.21 -0.3
131,431 - CA265_RS00585 0.23 +0.2
131,460 + CA265_RS00585 0.23 -1.7
131,461 - CA265_RS00585 0.23 +0.8
131,464 + CA265_RS00585 0.23 +1.1
131,464 + CA265_RS00585 0.23 +0.5
131,465 - CA265_RS00585 0.23 +0.6
131,465 - CA265_RS00585 0.23 +0.2
131,545 + CA265_RS00585 0.25 +0.1
131,564 - CA265_RS00585 0.26 -0.1
131,650 - CA265_RS00585 0.28 +0.3
131,652 + CA265_RS00585 0.28 +0.2
131,674 - CA265_RS00585 0.28 -0.3
131,720 + CA265_RS00585 0.29 -0.9
131,745 + CA265_RS00585 0.30 +0.5
131,749 + CA265_RS00585 0.30 +0.4
131,799 + CA265_RS00585 0.31 +0.6
131,800 - CA265_RS00585 0.31 -0.1
131,800 - CA265_RS00585 0.31 +0.9
131,809 + CA265_RS00585 0.31 +0.3
131,809 + CA265_RS00585 0.31 -0.3
131,816 - CA265_RS00585 0.31 +1.4
131,904 + CA265_RS00585 0.33 +1.2
131,918 + CA265_RS00585 0.34 +1.3
131,919 - CA265_RS00585 0.34 +1.6
131,919 - CA265_RS00585 0.34 -1.1
131,919 - CA265_RS00585 0.34 -1.1
131,919 - CA265_RS00585 0.34 +0.9
131,959 + CA265_RS00585 0.35 +1.4
132,148 - CA265_RS00585 0.39 -0.4
132,190 + CA265_RS00585 0.40 +0.3
132,247 - CA265_RS00585 0.41 -0.6
132,247 - CA265_RS00585 0.41 +0.6
132,301 + CA265_RS00585 0.42 -0.4
132,313 + CA265_RS00585 0.43 +0.0
132,475 + CA265_RS00585 0.46 +1.0
132,487 - CA265_RS00585 0.46 -0.1
132,523 + CA265_RS00585 0.47 +0.2
132,555 + CA265_RS00585 0.48 +0.4
132,577 + CA265_RS00585 0.48 +0.8
132,724 - CA265_RS00585 0.52 +0.2
132,735 + CA265_RS00585 0.52 +0.2
132,808 - CA265_RS00585 0.54 +1.3
132,810 + -0.4
132,811 - CA265_RS00585 0.54 -0.0
132,811 - CA265_RS00585 0.54 +0.8
132,917 - CA265_RS00585 0.56 -1.2
132,932 - CA265_RS00585 0.56 +0.4
132,937 + CA265_RS00585 0.57 -1.2
133,032 - CA265_RS00585 0.59 +0.3
133,053 - CA265_RS00585 0.59 +1.1
133,080 - CA265_RS00585 0.60 +0.4
133,103 - CA265_RS00585 0.60 +1.2
133,126 + CA265_RS00585 0.61 -1.2
133,156 + CA265_RS00585 0.62 +0.4
133,220 - CA265_RS00585 0.63 +0.6
133,234 - CA265_RS00585 0.63 +0.3
133,316 - CA265_RS00585 0.65 -0.3
133,498 - CA265_RS00585 0.69 -0.8
133,499 + CA265_RS00585 0.69 +0.6
133,500 - CA265_RS00585 0.69 -0.7
133,562 + CA265_RS00585 0.71 +1.6
133,562 + CA265_RS00585 0.71 -1.4
133,562 + CA265_RS00585 0.71 +1.6
133,562 + CA265_RS00585 0.71 -0.2
133,563 - CA265_RS00585 0.71 +1.0
133,563 - +1.6
133,563 - CA265_RS00585 0.71 -0.3
133,695 + CA265_RS00585 0.74 +0.2
133,695 + CA265_RS00585 0.74 +0.2
133,724 + CA265_RS00585 0.74 -0.2
133,725 - CA265_RS00585 0.74 +0.3
133,770 + CA265_RS00585 0.75 +0.0
133,771 - CA265_RS00585 0.75 +0.6
133,938 + CA265_RS00585 0.79 -0.1
133,963 + CA265_RS00585 0.80 +0.7
133,983 + CA265_RS00585 0.80 -0.0
133,984 - CA265_RS00585 0.80 -0.0
134,118 + CA265_RS00585 0.83 +0.1
134,118 + CA265_RS00585 0.83 +0.3
134,119 - CA265_RS00585 0.83 -0.8
134,122 + CA265_RS00585 0.83 +0.4
134,122 + CA265_RS00585 0.83 +0.3
134,122 + CA265_RS00585 0.83 +0.3
134,127 - CA265_RS00585 0.83 -0.0
134,127 - CA265_RS00585 0.83 -0.4
134,169 - CA265_RS00585 0.84 -0.5
134,233 + CA265_RS00585 0.86 +0.5
134,373 + CA265_RS00585 0.89 -1.1
134,374 - CA265_RS00585 0.89 -1.6
134,418 - +0.4
134,442 - +1.6
134,463 + +0.3
134,474 + +0.1
134,475 - -0.7
134,475 - +0.4
134,497 + +0.9
134,508 + -2.1
134,523 - -0.3
134,528 - -2.3
134,553 + +0.5
134,623 - +1.6
134,641 - +0.5
134,702 - +1.2
134,734 - +0.5
134,767 - -0.8
134,783 + -1.2
134,783 + +0.3
134,783 + -1.0
134,784 - +0.7
134,864 - +0.4

Or see this region's nucleotide sequence