Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS16275

Experiment: Recovery broth with Gramicidin 3e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Gramicidin 3e-04 mM
1,396,271	+				+0.2
1,396,421	-				-0.6
1,396,570	+		BBR_RS16270	0.33	-0.9
1,396,606	+		BBR_RS16270	0.40	+0.4
1,396,611	+		BBR_RS16270	0.41	-0.9
1,396,619	-		BBR_RS16270	0.43	+0.4
1,396,619	-		BBR_RS16270	0.43	-0.1
1,396,619	-		BBR_RS16270	0.43	-0.0
1,396,619	-		BBR_RS16270	0.43	+0.3
1,396,619	-		BBR_RS16270	0.43	+0.5
1,396,645	+		BBR_RS16270	0.48	+0.2
1,396,711	-		BBR_RS16270	0.60	-1.4
1,396,789	+		BBR_RS16270	0.75	+0.4
1,396,797	-		BBR_RS16270	0.77	-0.0
1,396,802	-		BBR_RS16270	0.78	+0.2
1,396,815	-		BBR_RS16270	0.80	-0.8
1,396,830	+		BBR_RS16270	0.83	-1.4
1,396,852	+		BBR_RS16270	0.87	+0.8
1,396,877	+				-0.1
1,396,877	+				+0.3
1,396,887	+				-0.4
1,396,898	+				+0.3
1,396,912	-				+0.5
1,396,965	+				+0.3
1,396,973	-				-0.3
1,397,060	+				+2.4
1,397,083	+				+0.2
1,397,091	-				-1.0
1,397,096	-				-1.4
1,397,101	+				+0.3
1,397,137	+				+0.1
1,397,144	-				+0.0
1,397,165	-				+0.3
1,397,208	+				-0.1
1,397,223	+				-0.9
1,397,223	+				+0.3
1,397,253	-				+0.7
1,397,267	-				-0.2
1,399,893	+		BBR_RS16275	0.89	-4.0
1,400,297	-				+0.6
1,400,328	-				+0.4
1,400,328	-				+0.2
1,400,343	+		BBR_RS16280	0.10	+0.8
1,400,408	-		BBR_RS16280	0.17	-0.5
1,400,457	-		BBR_RS16280	0.23	+0.6
1,400,459	+		BBR_RS16280	0.23	+0.3
1,400,459	+		BBR_RS16280	0.23	-0.9
1,400,467	-		BBR_RS16280	0.24	+0.8
1,400,474	+		BBR_RS16280	0.25	+1.4
1,400,474	+		BBR_RS16280	0.25	-1.2
1,400,474	+		BBR_RS16280	0.25	+0.2
1,400,494	+		BBR_RS16280	0.27	+0.3
1,400,494	+		BBR_RS16280	0.27	+0.2
1,400,516	-		BBR_RS16280	0.30	-0.9
1,400,534	-		BBR_RS16280	0.32	+0.5
1,400,534	-		BBR_RS16280	0.32	-0.2
1,400,564	+		BBR_RS16280	0.35	+0.3
1,400,572	-		BBR_RS16280	0.36	-0.8
1,400,595	-		BBR_RS16280	0.39	+0.4
1,400,603	+		BBR_RS16280	0.40	-1.1
1,400,641	+		BBR_RS16280	0.44	+0.0
1,400,647	-		BBR_RS16280	0.45	-1.3
1,400,652	-		BBR_RS16280	0.45	-2.0
1,400,703	+		BBR_RS16280	0.51	-0.1
1,400,708	+		BBR_RS16280	0.51	+0.1
1,400,708	+		BBR_RS16280	0.51	+0.9
1,400,711	-		BBR_RS16280	0.52	-1.0
1,400,711	-		BBR_RS16280	0.52	+0.1
1,400,719	-		BBR_RS16280	0.53	+0.1
1,400,721	-		BBR_RS16280	0.53	+0.4
1,400,722	+		BBR_RS16280	0.53	+0.1
1,400,730	-		BBR_RS16280	0.54	+0.2
1,400,730	-		BBR_RS16280	0.54	+0.3
1,400,793	-		BBR_RS16280	0.61	+0.4
1,400,809	-		BBR_RS16280	0.63	-0.2
1,400,811	-		BBR_RS16280	0.63	+0.2
1,400,846	+		BBR_RS16280	0.67	-0.2
1,400,873	-		BBR_RS16280	0.70	-1.3
1,400,901	+		BBR_RS16280	0.73	-0.5
1,400,976	-		BBR_RS16280	0.82	+0.6
1,400,991	+		BBR_RS16280	0.84	+1.1
1,401,026	+		BBR_RS16280	0.88	+0.8
1,401,041	+		BBR_RS16280	0.89	-0.1
1,401,041	+		BBR_RS16280	0.89	+1.0
1,401,041	+		BBR_RS16280	0.89	-0.7
1,401,041	+		BBR_RS16280	0.89	-0.5
1,401,049	-				+0.1
1,401,049	-				+1.4
1,401,049	-				-0.0
1,401,049	-				-0.7
1,401,049	-				-0.0
1,401,064	+				-0.5
1,401,072	-				+0.9
1,401,072	-				+0.3
1,401,072	-				+0.1
1,401,072	-				+0.2
1,401,072	-				+0.3
1,401,082	-				+2.0
1,401,082	-				+0.5
1,401,105	-				+0.1
1,401,169	+				+0.6
1,401,178	-				+1.2