Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12440

Experiment: Recovery broth with Gramicidin 3e-04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12435 and BBR_RS12440 are separated by 121 nucleotidesBBR_RS12440 and BBR_RS20695 are separated by 42 nucleotidesBBR_RS20695 and BBR_RS12445 are separated by 433 nucleotides BBR_RS12435: BBR_RS12435 - ABC transporter ATP-binding protein, at 538,133 to 539,551 _RS12435 BBR_RS12440: BBR_RS12440 - Permease of ABC transporter system, at 539,673 to 541,463 _RS12440 BBR_RS20695: BBR_RS20695 - hypothetical protein, at 541,506 to 541,820 _RS20695 BBR_RS12445: BBR_RS12445 - 50S ribosomal protein L19, at 542,254 to 542,619 _RS12445 Position (kb) 539 540 541 542Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 538.708 kb on + strand, within BBR_RS12435at 538.738 kb on + strand, within BBR_RS12435at 538.751 kb on + strand, within BBR_RS12435at 538.878 kb on - strand, within BBR_RS12435at 538.878 kb on - strand, within BBR_RS12435at 538.900 kb on + strand, within BBR_RS12435at 538.900 kb on + strand, within BBR_RS12435at 538.900 kb on + strand, within BBR_RS12435at 538.900 kb on + strand, within BBR_RS12435at 538.900 kb on + strand, within BBR_RS12435at 538.906 kb on - strand, within BBR_RS12435at 538.908 kb on - strand, within BBR_RS12435at 538.908 kb on - strand, within BBR_RS12435at 538.908 kb on - strand, within BBR_RS12435at 538.908 kb on - strand, within BBR_RS12435at 538.920 kb on - strand, within BBR_RS12435at 538.937 kb on - strand, within BBR_RS12435at 538.953 kb on - strand, within BBR_RS12435at 538.991 kb on + strand, within BBR_RS12435at 539.020 kb on - strand, within BBR_RS12435at 539.022 kb on + strand, within BBR_RS12435at 539.022 kb on + strand, within BBR_RS12435at 539.022 kb on + strand, within BBR_RS12435at 539.023 kb on - strand, within BBR_RS12435at 539.023 kb on - strand, within BBR_RS12435at 539.030 kb on - strand, within BBR_RS12435at 539.042 kb on + strand, within BBR_RS12435at 539.047 kb on + strand, within BBR_RS12435at 539.064 kb on + strand, within BBR_RS12435at 539.093 kb on - strand, within BBR_RS12435at 539.121 kb on - strand, within BBR_RS12435at 539.191 kb on + strand, within BBR_RS12435at 539.200 kb on - strand, within BBR_RS12435at 539.213 kb on + strand, within BBR_RS12435at 539.213 kb on + strand, within BBR_RS12435at 539.213 kb on + strand, within BBR_RS12435at 539.213 kb on + strand, within BBR_RS12435at 539.213 kb on + strand, within BBR_RS12435at 539.213 kb on + strand, within BBR_RS12435at 539.213 kb on + strand, within BBR_RS12435at 539.213 kb on + strand, within BBR_RS12435at 539.213 kb on + strand, within BBR_RS12435at 539.221 kb on - strand, within BBR_RS12435at 539.221 kb on - strand, within BBR_RS12435at 539.221 kb on - strand, within BBR_RS12435at 539.221 kb on - strand, within BBR_RS12435at 539.221 kb on - strand, within BBR_RS12435at 539.221 kb on - strand, within BBR_RS12435at 539.239 kb on + strand, within BBR_RS12435at 539.254 kb on - strand, within BBR_RS12435at 539.282 kb on + strand, within BBR_RS12435at 539.282 kb on + strand, within BBR_RS12435at 539.290 kb on - strand, within BBR_RS12435at 539.290 kb on - strand, within BBR_RS12435at 539.300 kb on + strand, within BBR_RS12435at 539.327 kb on + strand, within BBR_RS12435at 539.330 kb on - strand, within BBR_RS12435at 539.330 kb on - strand, within BBR_RS12435at 539.330 kb on - strand, within BBR_RS12435at 539.330 kb on - strand, within BBR_RS12435at 539.331 kb on + strand, within BBR_RS12435at 539.336 kb on + strand, within BBR_RS12435at 539.339 kb on - strand, within BBR_RS12435at 539.339 kb on - strand, within BBR_RS12435at 539.412 kb on - strandat 539.477 kb on - strandat 539.485 kb on - strandat 539.508 kb on + strandat 539.545 kb on + strandat 539.554 kb on - strandat 539.555 kb on - strandat 539.561 kb on - strandat 539.566 kb on - strandat 539.619 kb on + strandat 539.624 kb on + strandat 539.626 kb on - strandat 539.647 kb on + strandat 539.650 kb on + strandat 539.655 kb on - strandat 539.660 kb on + strandat 539.671 kb on + strandat 539.689 kb on - strandat 539.696 kb on + strandat 539.696 kb on + strandat 539.709 kb on - strandat 539.783 kb on - strandat 539.785 kb on + strandat 539.833 kb on - strandat 539.849 kb on + strandat 539.857 kb on - strand, within BBR_RS12440at 539.873 kb on + strand, within BBR_RS12440at 539.911 kb on - strand, within BBR_RS12440at 539.911 kb on - strand, within BBR_RS12440at 539.959 kb on - strand, within BBR_RS12440at 539.986 kb on - strand, within BBR_RS12440at 540.045 kb on - strand, within BBR_RS12440at 540.047 kb on + strand, within BBR_RS12440at 540.049 kb on + strand, within BBR_RS12440at 540.049 kb on + strand, within BBR_RS12440at 540.051 kb on + strand, within BBR_RS12440at 540.055 kb on - strand, within BBR_RS12440at 540.055 kb on - strand, within BBR_RS12440at 540.055 kb on - strand, within BBR_RS12440at 540.055 kb on - strand, within BBR_RS12440at 540.059 kb on - strand, within BBR_RS12440at 540.059 kb on - strand, within BBR_RS12440at 540.075 kb on + strand, within BBR_RS12440at 540.106 kb on + strand, within BBR_RS12440at 540.118 kb on + strand, within BBR_RS12440at 540.121 kb on - strand, within BBR_RS12440at 540.121 kb on - strand, within BBR_RS12440at 540.125 kb on + strand, within BBR_RS12440at 540.141 kb on + strand, within BBR_RS12440at 540.170 kb on - strand, within BBR_RS12440at 540.216 kb on + strand, within BBR_RS12440at 540.269 kb on - strand, within BBR_RS12440at 540.279 kb on - strand, within BBR_RS12440at 540.279 kb on - strand, within BBR_RS12440at 540.290 kb on - strand, within BBR_RS12440at 540.299 kb on - strand, within BBR_RS12440at 540.304 kb on + strand, within BBR_RS12440at 540.307 kb on + strand, within BBR_RS12440at 540.307 kb on + strand, within BBR_RS12440at 540.341 kb on + strand, within BBR_RS12440at 540.412 kb on - strand, within BBR_RS12440at 540.443 kb on - strand, within BBR_RS12440at 540.450 kb on - strand, within BBR_RS12440at 540.473 kb on + strand, within BBR_RS12440at 540.477 kb on - strand, within BBR_RS12440at 540.491 kb on - strand, within BBR_RS12440at 540.510 kb on - strand, within BBR_RS12440at 540.532 kb on + strand, within BBR_RS12440at 540.536 kb on - strand, within BBR_RS12440at 540.547 kb on + strand, within BBR_RS12440at 540.562 kb on + strand, within BBR_RS12440at 540.565 kb on - strand, within BBR_RS12440at 540.565 kb on - strand, within BBR_RS12440at 540.570 kb on + strand, within BBR_RS12440at 540.575 kb on - strand, within BBR_RS12440at 540.575 kb on - strand, within BBR_RS12440at 540.596 kb on - strand, within BBR_RS12440at 540.631 kb on + strand, within BBR_RS12440at 540.654 kb on - strand, within BBR_RS12440at 540.654 kb on - strand, within BBR_RS12440at 540.654 kb on - strand, within BBR_RS12440at 540.677 kb on + strand, within BBR_RS12440at 540.725 kb on + strand, within BBR_RS12440at 540.747 kb on - strand, within BBR_RS12440at 540.749 kb on + strand, within BBR_RS12440at 540.749 kb on + strand, within BBR_RS12440at 540.749 kb on + strand, within BBR_RS12440at 540.752 kb on - strand, within BBR_RS12440at 540.757 kb on - strand, within BBR_RS12440at 540.794 kb on + strand, within BBR_RS12440at 540.804 kb on + strand, within BBR_RS12440at 540.804 kb on + strand, within BBR_RS12440at 540.804 kb on + strand, within BBR_RS12440at 540.836 kb on - strand, within BBR_RS12440at 540.846 kb on - strand, within BBR_RS12440at 540.876 kb on - strand, within BBR_RS12440at 540.887 kb on + strand, within BBR_RS12440at 540.887 kb on + strand, within BBR_RS12440at 540.887 kb on + strand, within BBR_RS12440at 540.893 kb on + strand, within BBR_RS12440at 540.893 kb on + strand, within BBR_RS12440at 540.893 kb on + strand, within BBR_RS12440at 540.895 kb on - strand, within BBR_RS12440at 540.901 kb on - strand, within BBR_RS12440at 540.901 kb on - strand, within BBR_RS12440at 540.901 kb on - strand, within BBR_RS12440at 540.910 kb on + strand, within BBR_RS12440at 540.929 kb on + strand, within BBR_RS12440at 540.937 kb on - strand, within BBR_RS12440at 540.945 kb on - strand, within BBR_RS12440at 540.949 kb on - strand, within BBR_RS12440at 540.960 kb on + strand, within BBR_RS12440at 541.019 kb on + strand, within BBR_RS12440at 541.025 kb on - strand, within BBR_RS12440at 541.027 kb on - strand, within BBR_RS12440at 541.097 kb on - strand, within BBR_RS12440at 541.137 kb on - strand, within BBR_RS12440at 541.152 kb on + strand, within BBR_RS12440at 541.162 kb on + strand, within BBR_RS12440at 541.172 kb on - strand, within BBR_RS12440at 541.200 kb on + strand, within BBR_RS12440at 541.219 kb on + strand, within BBR_RS12440at 541.241 kb on + strand, within BBR_RS12440at 541.249 kb on - strand, within BBR_RS12440at 541.260 kb on + strand, within BBR_RS12440at 541.268 kb on - strand, within BBR_RS12440at 541.268 kb on - strand, within BBR_RS12440at 541.283 kb on + strand, within BBR_RS12440at 541.347 kb on - strandat 541.364 kb on + strandat 541.371 kb on + strandat 541.379 kb on + strandat 541.383 kb on + strandat 541.396 kb on - strandat 541.430 kb on - strandat 541.430 kb on - strandat 541.470 kb on + strandat 541.570 kb on - strand, within BBR_RS20695at 541.661 kb on + strand, within BBR_RS20695at 541.689 kb on + strand, within BBR_RS20695at 541.710 kb on + strand, within BBR_RS20695at 541.711 kb on - strand, within BBR_RS20695at 541.783 kb on + strand, within BBR_RS20695at 541.847 kb on - strandat 541.864 kb on + strandat 541.888 kb on + strandat 541.889 kb on + strandat 541.930 kb on + strandat 541.932 kb on - strandat 541.941 kb on + strandat 541.941 kb on + strandat 541.948 kb on + strandat 541.968 kb on + strandat 542.011 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Gramicidin 3e-04 mM
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538,708 + BBR_RS12435 0.41 -3.0
538,738 + BBR_RS12435 0.43 -1.1
538,751 + BBR_RS12435 0.44 -1.9
538,878 - BBR_RS12435 0.53 -3.2
538,878 - BBR_RS12435 0.53 -3.1
538,900 + BBR_RS12435 0.54 -5.5
538,900 + BBR_RS12435 0.54 -2.4
538,900 + BBR_RS12435 0.54 -3.8
538,900 + BBR_RS12435 0.54 -2.4
538,900 + BBR_RS12435 0.54 -1.5
538,906 - BBR_RS12435 0.54 -3.7
538,908 - BBR_RS12435 0.55 +0.7
538,908 - BBR_RS12435 0.55 -3.8
538,908 - BBR_RS12435 0.55 -2.8
538,908 - BBR_RS12435 0.55 -0.8
538,920 - BBR_RS12435 0.55 -2.7
538,937 - BBR_RS12435 0.57 -2.8
538,953 - BBR_RS12435 0.58 -4.5
538,991 + BBR_RS12435 0.60 -3.9
539,020 - BBR_RS12435 0.63 -2.6
539,022 + BBR_RS12435 0.63 -2.6
539,022 + BBR_RS12435 0.63 +2.7
539,022 + BBR_RS12435 0.63 -3.9
539,023 - BBR_RS12435 0.63 -3.5
539,023 - BBR_RS12435 0.63 -3.4
539,030 - BBR_RS12435 0.63 -2.4
539,042 + BBR_RS12435 0.64 -3.2
539,047 + BBR_RS12435 0.64 -0.9
539,064 + BBR_RS12435 0.66 -2.3
539,093 - BBR_RS12435 0.68 -3.2
539,121 - BBR_RS12435 0.70 -2.4
539,191 + BBR_RS12435 0.75 -2.0
539,200 - BBR_RS12435 0.75 -2.5
539,213 + BBR_RS12435 0.76 -1.3
539,213 + BBR_RS12435 0.76 -1.2
539,213 + BBR_RS12435 0.76 -4.5
539,213 + BBR_RS12435 0.76 +2.7
539,213 + BBR_RS12435 0.76 -2.4
539,213 + BBR_RS12435 0.76 -4.4
539,213 + BBR_RS12435 0.76 -3.2
539,213 + BBR_RS12435 0.76 -2.8
539,213 + BBR_RS12435 0.76 -2.4
539,221 - BBR_RS12435 0.77 -3.7
539,221 - BBR_RS12435 0.77 -2.9
539,221 - BBR_RS12435 0.77 -2.7
539,221 - BBR_RS12435 0.77 -1.9
539,221 - BBR_RS12435 0.77 -2.6
539,221 - BBR_RS12435 0.77 -3.4
539,239 + BBR_RS12435 0.78 -2.0
539,254 - BBR_RS12435 0.79 -3.6
539,282 + BBR_RS12435 0.81 -3.9
539,282 + BBR_RS12435 0.81 -2.7
539,290 - BBR_RS12435 0.82 -3.9
539,290 - BBR_RS12435 0.82 -4.2
539,300 + BBR_RS12435 0.82 -3.2
539,327 + BBR_RS12435 0.84 +0.1
539,330 - BBR_RS12435 0.84 -2.8
539,330 - BBR_RS12435 0.84 -3.4
539,330 - BBR_RS12435 0.84 -2.6
539,330 - BBR_RS12435 0.84 -1.2
539,331 + BBR_RS12435 0.84 -1.8
539,336 + BBR_RS12435 0.85 -3.9
539,339 - BBR_RS12435 0.85 -1.4
539,339 - BBR_RS12435 0.85 -1.8
539,412 - -1.5
539,477 - -2.9
539,485 - -3.4
539,508 + -3.2
539,545 + -3.8
539,554 - -0.6
539,555 - -4.0
539,561 - -0.9
539,566 - -1.0
539,619 + +1.7
539,624 + -2.1
539,626 - +0.4
539,647 + -3.2
539,650 + -1.6
539,655 - -0.2
539,660 + -3.2
539,671 + -1.6
539,689 - -2.2
539,696 + -3.3
539,696 + -1.8
539,709 - +0.0
539,783 - -3.3
539,785 + -2.5
539,833 - -4.1
539,849 + -2.9
539,857 - BBR_RS12440 0.10 -1.6
539,873 + BBR_RS12440 0.11 -2.5
539,911 - BBR_RS12440 0.13 -0.5
539,911 - BBR_RS12440 0.13 -2.6
539,959 - BBR_RS12440 0.16 -4.2
539,986 - BBR_RS12440 0.17 -1.4
540,045 - BBR_RS12440 0.21 -2.6
540,047 + BBR_RS12440 0.21 -3.4
540,049 + BBR_RS12440 0.21 -5.2
540,049 + BBR_RS12440 0.21 -2.7
540,051 + BBR_RS12440 0.21 -3.3
540,055 - BBR_RS12440 0.21 -4.1
540,055 - BBR_RS12440 0.21 -4.0
540,055 - BBR_RS12440 0.21 -2.1
540,055 - BBR_RS12440 0.21 -3.0
540,059 - BBR_RS12440 0.22 -1.8
540,059 - BBR_RS12440 0.22 -1.6
540,075 + BBR_RS12440 0.22 -1.1
540,106 + BBR_RS12440 0.24 -1.4
540,118 + BBR_RS12440 0.25 -4.8
540,121 - BBR_RS12440 0.25 -2.9
540,121 - BBR_RS12440 0.25 -3.6
540,125 + BBR_RS12440 0.25 -3.7
540,141 + BBR_RS12440 0.26 -4.1
540,170 - BBR_RS12440 0.28 -3.8
540,216 + BBR_RS12440 0.30 -4.1
540,269 - BBR_RS12440 0.33 -1.9
540,279 - BBR_RS12440 0.34 -1.9
540,279 - BBR_RS12440 0.34 -2.6
540,290 - BBR_RS12440 0.34 -1.1
540,299 - BBR_RS12440 0.35 -3.7
540,304 + BBR_RS12440 0.35 -2.2
540,307 + BBR_RS12440 0.35 -3.7
540,307 + BBR_RS12440 0.35 -2.9
540,341 + BBR_RS12440 0.37 -4.0
540,412 - BBR_RS12440 0.41 -3.2
540,443 - BBR_RS12440 0.43 -2.3
540,450 - BBR_RS12440 0.43 -1.2
540,473 + BBR_RS12440 0.45 -3.3
540,477 - BBR_RS12440 0.45 -2.4
540,491 - BBR_RS12440 0.46 -1.8
540,510 - BBR_RS12440 0.47 -0.8
540,532 + BBR_RS12440 0.48 -2.5
540,536 - BBR_RS12440 0.48 -4.8
540,547 + BBR_RS12440 0.49 -2.1
540,562 + BBR_RS12440 0.50 -3.4
540,565 - BBR_RS12440 0.50 -3.4
540,565 - BBR_RS12440 0.50 -3.6
540,570 + BBR_RS12440 0.50 -2.2
540,575 - BBR_RS12440 0.50 -2.3
540,575 - BBR_RS12440 0.50 -4.2
540,596 - BBR_RS12440 0.52 -2.7
540,631 + BBR_RS12440 0.53 -2.7
540,654 - BBR_RS12440 0.55 -2.4
540,654 - BBR_RS12440 0.55 -2.2
540,654 - BBR_RS12440 0.55 -2.1
540,677 + BBR_RS12440 0.56 -4.6
540,725 + BBR_RS12440 0.59 -1.6
540,747 - BBR_RS12440 0.60 -3.0
540,749 + BBR_RS12440 0.60 -2.4
540,749 + BBR_RS12440 0.60 -4.4
540,749 + BBR_RS12440 0.60 -3.2
540,752 - BBR_RS12440 0.60 -3.7
540,757 - BBR_RS12440 0.61 -4.6
540,794 + BBR_RS12440 0.63 -3.1
540,804 + BBR_RS12440 0.63 -2.4
540,804 + BBR_RS12440 0.63 -3.3
540,804 + BBR_RS12440 0.63 -2.7
540,836 - BBR_RS12440 0.65 -3.0
540,846 - BBR_RS12440 0.65 -2.0
540,876 - BBR_RS12440 0.67 -2.4
540,887 + BBR_RS12440 0.68 -3.7
540,887 + BBR_RS12440 0.68 -3.0
540,887 + BBR_RS12440 0.68 -1.8
540,893 + BBR_RS12440 0.68 -3.5
540,893 + BBR_RS12440 0.68 -3.7
540,893 + BBR_RS12440 0.68 -3.1
540,895 - BBR_RS12440 0.68 -3.0
540,901 - BBR_RS12440 0.69 -1.6
540,901 - BBR_RS12440 0.69 -2.1
540,901 - BBR_RS12440 0.69 -3.4
540,910 + BBR_RS12440 0.69 -2.3
540,929 + BBR_RS12440 0.70 -0.3
540,937 - BBR_RS12440 0.71 -2.3
540,945 - BBR_RS12440 0.71 -3.2
540,949 - BBR_RS12440 0.71 -3.8
540,960 + BBR_RS12440 0.72 -2.7
541,019 + BBR_RS12440 0.75 -3.6
541,025 - BBR_RS12440 0.75 -1.8
541,027 - BBR_RS12440 0.76 -1.4
541,097 - BBR_RS12440 0.80 -3.8
541,137 - BBR_RS12440 0.82 -2.7
541,152 + BBR_RS12440 0.83 -4.2
541,162 + BBR_RS12440 0.83 -3.5
541,172 - BBR_RS12440 0.84 -3.2
541,200 + BBR_RS12440 0.85 -1.3
541,219 + BBR_RS12440 0.86 -4.6
541,241 + BBR_RS12440 0.88 -2.4
541,249 - BBR_RS12440 0.88 -1.5
541,260 + BBR_RS12440 0.89 -2.4
541,268 - BBR_RS12440 0.89 -2.9
541,268 - BBR_RS12440 0.89 -3.3
541,283 + BBR_RS12440 0.90 -3.0
541,347 - -2.5
541,364 + -2.4
541,371 + -1.4
541,379 + -0.9
541,383 + -3.9
541,396 - -1.4
541,430 - -2.1
541,430 - -1.7
541,470 + +1.2
541,570 - BBR_RS20695 0.20 -3.5
541,661 + BBR_RS20695 0.49 -2.6
541,689 + BBR_RS20695 0.58 -2.2
541,710 + BBR_RS20695 0.65 -3.4
541,711 - BBR_RS20695 0.65 -0.4
541,783 + BBR_RS20695 0.88 -3.4
541,847 - -1.8
541,864 + -2.3
541,888 + -1.0
541,889 + -1.7
541,930 + -1.0
541,932 - -0.5
541,941 + -2.9
541,941 + -0.1
541,948 + -2.2
541,968 + -2.0
542,011 - +0.8

Or see this region's nucleotide sequence