Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22790

Experiment: soil sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22785 and ABZR87_RS22790 are separated by 25 nucleotidesABZR87_RS22790 and ABZR87_RS22795 are separated by 66 nucleotidesABZR87_RS22795 and ABZR87_RS22800 are separated by 102 nucleotides ABZR87_RS22785: ABZR87_RS22785 - aliphatic amidase, at 1,472,498 to 1,473,520 _RS22785 ABZR87_RS22790: ABZR87_RS22790 - formamidase, at 1,473,546 to 1,474,727 _RS22790 ABZR87_RS22795: ABZR87_RS22795 - zinc ribbon domain-containing protein, at 1,474,794 to 1,475,093 _RS22795 ABZR87_RS22800: ABZR87_RS22800 - MerR family transcriptional regulator, at 1,475,196 to 1,476,224 _RS22800 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1472.696 kb on + strand, within ABZR87_RS22785at 1472.697 kb on - strand, within ABZR87_RS22785at 1472.697 kb on - strand, within ABZR87_RS22785at 1472.697 kb on - strand, within ABZR87_RS22785at 1472.714 kb on + strand, within ABZR87_RS22785at 1472.715 kb on - strand, within ABZR87_RS22785at 1472.843 kb on + strand, within ABZR87_RS22785at 1472.843 kb on + strand, within ABZR87_RS22785at 1472.843 kb on + strand, within ABZR87_RS22785at 1472.843 kb on + strand, within ABZR87_RS22785at 1472.844 kb on - strand, within ABZR87_RS22785at 1472.844 kb on - strand, within ABZR87_RS22785at 1472.844 kb on - strand, within ABZR87_RS22785at 1472.891 kb on + strand, within ABZR87_RS22785at 1472.892 kb on - strand, within ABZR87_RS22785at 1472.948 kb on + strand, within ABZR87_RS22785at 1472.948 kb on + strand, within ABZR87_RS22785at 1472.948 kb on + strand, within ABZR87_RS22785at 1472.948 kb on + strand, within ABZR87_RS22785at 1472.948 kb on + strand, within ABZR87_RS22785at 1472.949 kb on - strand, within ABZR87_RS22785at 1472.949 kb on - strand, within ABZR87_RS22785at 1472.949 kb on - strand, within ABZR87_RS22785at 1473.009 kb on - strand, within ABZR87_RS22785at 1473.009 kb on - strand, within ABZR87_RS22785at 1473.009 kb on - strand, within ABZR87_RS22785at 1473.071 kb on + strand, within ABZR87_RS22785at 1473.071 kb on + strand, within ABZR87_RS22785at 1473.071 kb on + strand, within ABZR87_RS22785at 1473.071 kb on + strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.077 kb on + strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.137 kb on + strand, within ABZR87_RS22785at 1473.138 kb on - strand, within ABZR87_RS22785at 1473.138 kb on - strand, within ABZR87_RS22785at 1473.138 kb on - strand, within ABZR87_RS22785at 1473.177 kb on - strand, within ABZR87_RS22785at 1473.177 kb on - strand, within ABZR87_RS22785at 1473.326 kb on + strand, within ABZR87_RS22785at 1473.326 kb on + strand, within ABZR87_RS22785at 1473.326 kb on + strand, within ABZR87_RS22785at 1473.326 kb on + strand, within ABZR87_RS22785at 1473.326 kb on + strand, within ABZR87_RS22785at 1473.327 kb on - strand, within ABZR87_RS22785at 1473.327 kb on - strand, within ABZR87_RS22785at 1473.327 kb on - strand, within ABZR87_RS22785at 1473.327 kb on - strand, within ABZR87_RS22785at 1473.327 kb on - strand, within ABZR87_RS22785at 1473.328 kb on + strand, within ABZR87_RS22785at 1473.328 kb on + strand, within ABZR87_RS22785at 1473.329 kb on - strand, within ABZR87_RS22785at 1473.329 kb on - strand, within ABZR87_RS22785at 1473.329 kb on - strand, within ABZR87_RS22785at 1473.329 kb on - strand, within ABZR87_RS22785at 1473.410 kb on + strand, within ABZR87_RS22785at 1473.411 kb on - strand, within ABZR87_RS22785at 1473.411 kb on - strand, within ABZR87_RS22785at 1473.772 kb on - strand, within ABZR87_RS22790at 1473.772 kb on - strand, within ABZR87_RS22790at 1473.772 kb on - strand, within ABZR87_RS22790at 1473.895 kb on - strand, within ABZR87_RS22790at 1473.940 kb on - strand, within ABZR87_RS22790at 1474.236 kb on + strand, within ABZR87_RS22790at 1474.236 kb on + strand, within ABZR87_RS22790at 1474.237 kb on - strand, within ABZR87_RS22790at 1474.237 kb on - strand, within ABZR87_RS22790at 1474.237 kb on - strand, within ABZR87_RS22790at 1474.318 kb on - strand, within ABZR87_RS22790at 1474.374 kb on + strand, within ABZR87_RS22790at 1474.374 kb on + strand, within ABZR87_RS22790at 1474.374 kb on + strand, within ABZR87_RS22790at 1474.375 kb on - strand, within ABZR87_RS22790at 1474.473 kb on + strand, within ABZR87_RS22790at 1474.473 kb on + strand, within ABZR87_RS22790at 1474.473 kb on + strand, within ABZR87_RS22790at 1474.474 kb on - strand, within ABZR87_RS22790at 1474.474 kb on - strand, within ABZR87_RS22790at 1474.474 kb on - strand, within ABZR87_RS22790at 1474.477 kb on - strand, within ABZR87_RS22790at 1474.477 kb on - strand, within ABZR87_RS22790at 1474.563 kb on + strand, within ABZR87_RS22790at 1474.563 kb on + strand, within ABZR87_RS22790at 1474.563 kb on + strand, within ABZR87_RS22790at 1474.563 kb on + strand, within ABZR87_RS22790at 1474.563 kb on + strand, within ABZR87_RS22790at 1474.563 kb on + strand, within ABZR87_RS22790at 1474.563 kb on + strand, within ABZR87_RS22790at 1474.564 kb on - strand, within ABZR87_RS22790at 1474.564 kb on - strand, within ABZR87_RS22790at 1474.741 kb on + strandat 1474.742 kb on - strandat 1474.803 kb on + strandat 1474.803 kb on + strandat 1474.803 kb on + strandat 1474.803 kb on + strandat 1474.804 kb on - strandat 1474.804 kb on - strandat 1474.804 kb on - strandat 1474.804 kb on - strandat 1474.804 kb on - strandat 1474.804 kb on - strandat 1474.804 kb on - strandat 1474.804 kb on - strandat 1474.818 kb on - strandat 1475.236 kb on + strandat 1475.237 kb on - strandat 1475.338 kb on + strand, within ABZR87_RS22800at 1475.339 kb on - strand, within ABZR87_RS22800at 1475.506 kb on + strand, within ABZR87_RS22800at 1475.507 kb on - strand, within ABZR87_RS22800at 1475.515 kb on + strand, within ABZR87_RS22800at 1475.515 kb on + strand, within ABZR87_RS22800

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 7; outgrowth in LB
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1,472,696 + ABZR87_RS22785 0.19 +0.2
1,472,697 - ABZR87_RS22785 0.19 -0.5
1,472,697 - ABZR87_RS22785 0.19 +0.1
1,472,697 - ABZR87_RS22785 0.19 +0.7
1,472,714 + ABZR87_RS22785 0.21 +0.4
1,472,715 - ABZR87_RS22785 0.21 +0.3
1,472,843 + ABZR87_RS22785 0.34 -0.3
1,472,843 + ABZR87_RS22785 0.34 +1.0
1,472,843 + ABZR87_RS22785 0.34 -0.0
1,472,843 + ABZR87_RS22785 0.34 +0.9
1,472,844 - ABZR87_RS22785 0.34 -0.2
1,472,844 - ABZR87_RS22785 0.34 -1.4
1,472,844 - ABZR87_RS22785 0.34 -0.0
1,472,891 + ABZR87_RS22785 0.38 -0.2
1,472,892 - ABZR87_RS22785 0.39 -0.7
1,472,948 + ABZR87_RS22785 0.44 -1.2
1,472,948 + ABZR87_RS22785 0.44 -0.1
1,472,948 + ABZR87_RS22785 0.44 -0.1
1,472,948 + ABZR87_RS22785 0.44 +0.6
1,472,948 + ABZR87_RS22785 0.44 +0.9
1,472,949 - ABZR87_RS22785 0.44 +1.0
1,472,949 - ABZR87_RS22785 0.44 +0.4
1,472,949 - ABZR87_RS22785 0.44 -0.1
1,473,009 - ABZR87_RS22785 0.50 +0.1
1,473,009 - ABZR87_RS22785 0.50 +0.5
1,473,009 - ABZR87_RS22785 0.50 +0.2
1,473,071 + ABZR87_RS22785 0.56 +0.6
1,473,071 + ABZR87_RS22785 0.56 +1.0
1,473,071 + ABZR87_RS22785 0.56 -0.4
1,473,071 + ABZR87_RS22785 0.56 -0.4
1,473,072 - ABZR87_RS22785 0.56 -1.1
1,473,072 - ABZR87_RS22785 0.56 -0.2
1,473,072 - ABZR87_RS22785 0.56 -0.3
1,473,072 - ABZR87_RS22785 0.56 +0.9
1,473,072 - ABZR87_RS22785 0.56 +0.3
1,473,072 - ABZR87_RS22785 0.56 -0.1
1,473,072 - ABZR87_RS22785 0.56 +0.4
1,473,077 + ABZR87_RS22785 0.57 -1.3
1,473,078 - ABZR87_RS22785 0.57 -0.3
1,473,078 - ABZR87_RS22785 0.57 -1.4
1,473,078 - ABZR87_RS22785 0.57 -0.1
1,473,078 - ABZR87_RS22785 0.57 -0.2
1,473,078 - ABZR87_RS22785 0.57 +0.3
1,473,078 - ABZR87_RS22785 0.57 -0.7
1,473,137 + ABZR87_RS22785 0.62 +0.7
1,473,138 - ABZR87_RS22785 0.63 +0.4
1,473,138 - ABZR87_RS22785 0.63 +0.1
1,473,138 - ABZR87_RS22785 0.63 -0.1
1,473,177 - ABZR87_RS22785 0.66 +0.2
1,473,177 - ABZR87_RS22785 0.66 +0.6
1,473,326 + ABZR87_RS22785 0.81 -0.5
1,473,326 + ABZR87_RS22785 0.81 -1.4
1,473,326 + ABZR87_RS22785 0.81 -1.2
1,473,326 + ABZR87_RS22785 0.81 +0.3
1,473,326 + ABZR87_RS22785 0.81 -0.6
1,473,327 - ABZR87_RS22785 0.81 +0.1
1,473,327 - ABZR87_RS22785 0.81 +0.1
1,473,327 - ABZR87_RS22785 0.81 +1.1
1,473,327 - ABZR87_RS22785 0.81 -0.7
1,473,327 - ABZR87_RS22785 0.81 +0.9
1,473,328 + ABZR87_RS22785 0.81 -0.6
1,473,328 + ABZR87_RS22785 0.81 -0.7
1,473,329 - ABZR87_RS22785 0.81 -1.0
1,473,329 - ABZR87_RS22785 0.81 -0.3
1,473,329 - ABZR87_RS22785 0.81 -1.0
1,473,329 - ABZR87_RS22785 0.81 +0.0
1,473,410 + ABZR87_RS22785 0.89 +1.1
1,473,411 - ABZR87_RS22785 0.89 +0.1
1,473,411 - ABZR87_RS22785 0.89 +0.2
1,473,772 - ABZR87_RS22790 0.19 -0.7
1,473,772 - ABZR87_RS22790 0.19 -1.0
1,473,772 - ABZR87_RS22790 0.19 -0.8
1,473,895 - ABZR87_RS22790 0.30 +0.0
1,473,940 - ABZR87_RS22790 0.33 -0.3
1,474,236 + ABZR87_RS22790 0.58 -1.0
1,474,236 + ABZR87_RS22790 0.58 -1.1
1,474,237 - ABZR87_RS22790 0.58 -0.6
1,474,237 - ABZR87_RS22790 0.58 +0.0
1,474,237 - ABZR87_RS22790 0.58 -0.2
1,474,318 - ABZR87_RS22790 0.65 +0.3
1,474,374 + ABZR87_RS22790 0.70 -0.8
1,474,374 + ABZR87_RS22790 0.70 -1.9
1,474,374 + ABZR87_RS22790 0.70 -0.0
1,474,375 - ABZR87_RS22790 0.70 -0.9
1,474,473 + ABZR87_RS22790 0.78 +0.2
1,474,473 + ABZR87_RS22790 0.78 -0.5
1,474,473 + ABZR87_RS22790 0.78 -2.2
1,474,474 - ABZR87_RS22790 0.79 +0.1
1,474,474 - ABZR87_RS22790 0.79 +0.6
1,474,474 - ABZR87_RS22790 0.79 -0.4
1,474,477 - ABZR87_RS22790 0.79 -0.8
1,474,477 - ABZR87_RS22790 0.79 +0.6
1,474,563 + ABZR87_RS22790 0.86 -2.0
1,474,563 + ABZR87_RS22790 0.86 -0.2
1,474,563 + ABZR87_RS22790 0.86 -0.0
1,474,563 + ABZR87_RS22790 0.86 +0.1
1,474,563 + ABZR87_RS22790 0.86 -0.1
1,474,563 + ABZR87_RS22790 0.86 -0.3
1,474,563 + ABZR87_RS22790 0.86 +0.7
1,474,564 - ABZR87_RS22790 0.86 -2.0
1,474,564 - ABZR87_RS22790 0.86 -0.8
1,474,741 + -0.0
1,474,742 - +0.2
1,474,803 + +0.4
1,474,803 + -0.0
1,474,803 + +0.2
1,474,803 + -0.5
1,474,804 - +0.7
1,474,804 - +3.6
1,474,804 - +0.2
1,474,804 - -1.4
1,474,804 - -0.3
1,474,804 - +0.6
1,474,804 - -0.9
1,474,804 - +0.3
1,474,818 - -0.1
1,475,236 + +0.1
1,475,237 - +0.3
1,475,338 + ABZR87_RS22800 0.14 +0.6
1,475,339 - ABZR87_RS22800 0.14 -0.4
1,475,506 + ABZR87_RS22800 0.30 -0.7
1,475,507 - ABZR87_RS22800 0.30 -0.3
1,475,515 + ABZR87_RS22800 0.31 +0.3
1,475,515 + ABZR87_RS22800 0.31 -0.5

Or see this region's nucleotide sequence