Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22245

Experiment: soil sample 7; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	soil sample 7; outgrowth in LB
1,350,533	+		ABZR87_RS22240	0.11	+1.6
1,350,533	+		ABZR87_RS22240	0.11	+1.4
1,350,555	-		ABZR87_RS22240	0.14	+1.2
1,350,582	-		ABZR87_RS22240	0.16	+1.6
1,350,662	+		ABZR87_RS22240	0.25	+2.6
1,350,662	+		ABZR87_RS22240	0.25	+1.1
1,350,663	-		ABZR87_RS22240	0.25	+1.2
1,350,776	+		ABZR87_RS22240	0.37	+0.4
1,350,777	-		ABZR87_RS22240	0.37	+1.8
1,350,777	-		ABZR87_RS22240	0.37	+1.1
1,350,777	-		ABZR87_RS22240	0.37	+0.4
1,350,831	+		ABZR87_RS22240	0.42	+1.3
1,350,832	-		ABZR87_RS22240	0.42	+0.3
1,350,861	-		ABZR87_RS22240	0.46	+0.8
1,350,920	+		ABZR87_RS22240	0.52	+1.6
1,350,920	+		ABZR87_RS22240	0.52	+1.4
1,350,921	-		ABZR87_RS22240	0.52	+2.8
1,350,921	-		ABZR87_RS22240	0.52	+0.5
1,350,921	-		ABZR87_RS22240	0.52	+1.7
1,350,921	-		ABZR87_RS22240	0.52	+1.5
1,350,921	-		ABZR87_RS22240	0.52	-0.1
1,351,032	-		ABZR87_RS22240	0.63	+1.9
1,351,032	-		ABZR87_RS22240	0.63	+0.7
1,351,032	-		ABZR87_RS22240	0.63	-0.5
1,351,199	+		ABZR87_RS22240	0.81	+0.9
1,351,200	-		ABZR87_RS22240	0.81	+1.4
1,351,371	+				+0.3
1,351,371	+				+1.2
1,351,371	+				+0.5
1,351,406	+				+0.3
1,351,406	+				-0.0
1,351,406	+				+0.1
1,351,406	+				+0.5
1,351,519	+				+1.0
1,351,520	-				+2.7
1,351,520	-				+1.1
1,351,520	-				+1.2
1,351,531	+				+0.7
1,351,531	+				+1.0
1,351,532	-				+1.0
1,351,532	-				+0.7
1,351,532	-				+0.7
1,351,532	-				+1.3
1,351,532	-				+0.7
1,351,532	-				+1.6
1,351,852	+		ABZR87_RS22245	0.21	+1.1
1,351,870	+		ABZR87_RS22245	0.22	+1.5
1,351,870	+		ABZR87_RS22245	0.22	+1.8
1,351,871	-		ABZR87_RS22245	0.22	+1.3
1,351,891	+		ABZR87_RS22245	0.23	+1.0
1,351,891	+		ABZR87_RS22245	0.23	+0.7
1,351,891	+		ABZR87_RS22245	0.23	+0.5
1,351,892	-		ABZR87_RS22245	0.23	+1.0
1,351,892	-		ABZR87_RS22245	0.23	+0.7
1,351,892	-		ABZR87_RS22245	0.23	+1.5
1,351,969	+		ABZR87_RS22245	0.27	+1.0
1,351,969	+		ABZR87_RS22245	0.27	+2.3
1,351,969	+		ABZR87_RS22245	0.27	+1.5
1,351,969	+		ABZR87_RS22245	0.27	+3.0
1,351,970	-		ABZR87_RS22245	0.27	+1.5
1,352,008	+		ABZR87_RS22245	0.29	+0.9
1,352,008	+		ABZR87_RS22245	0.29	+0.7
1,352,009	-		ABZR87_RS22245	0.29	+1.5
1,352,009	-		ABZR87_RS22245	0.29	+0.3
1,352,009	-		ABZR87_RS22245	0.29	+2.1
1,352,009	-		ABZR87_RS22245	0.29	+1.9
1,352,275	+		ABZR87_RS22245	0.43	+0.7
1,352,290	+		ABZR87_RS22245	0.43	+0.8
1,352,291	-		ABZR87_RS22245	0.44	+1.5
1,352,302	+		ABZR87_RS22245	0.44	+1.0
1,352,302	+		ABZR87_RS22245	0.44	+1.4
1,352,605	+		ABZR87_RS22245	0.60	+1.0
1,352,606	-		ABZR87_RS22245	0.60	+1.5
1,352,606	-		ABZR87_RS22245	0.60	+1.8
1,352,632	+		ABZR87_RS22245	0.61	+0.8
1,352,633	-		ABZR87_RS22245	0.61	+0.7
1,352,633	-		ABZR87_RS22245	0.61	+0.8
1,352,659	+		ABZR87_RS22245	0.63	+1.7
1,352,659	+		ABZR87_RS22245	0.63	+1.6
1,352,659	+		ABZR87_RS22245	0.63	+0.6
1,352,701	+		ABZR87_RS22245	0.65	+1.6
1,352,701	+		ABZR87_RS22245	0.65	+0.9
1,352,701	+		ABZR87_RS22245	0.65	+0.2
1,352,701	+		ABZR87_RS22245	0.65	+1.0
1,352,701	+		ABZR87_RS22245	0.65	+0.9
1,352,701	+		ABZR87_RS22245	0.65	+1.2
1,352,701	+		ABZR87_RS22245	0.65	+1.8
1,352,701	+		ABZR87_RS22245	0.65	+1.5
1,352,702	-		ABZR87_RS22245	0.65	+1.1
1,352,702	-		ABZR87_RS22245	0.65	+0.8
1,352,702	-		ABZR87_RS22245	0.65	+0.9
1,353,088	+		ABZR87_RS22245	0.85	+1.0
1,353,088	+		ABZR87_RS22245	0.85	+1.4
1,353,088	+		ABZR87_RS22245	0.85	+1.3
1,353,088	+		ABZR87_RS22245	0.85	+1.0
1,353,088	+		ABZR87_RS22245	0.85	+1.1
1,353,088	+		ABZR87_RS22245	0.85	+3.1
1,353,088	+		ABZR87_RS22245	0.85	+1.7
1,353,089	-		ABZR87_RS22245	0.85	+1.1
1,353,089	-		ABZR87_RS22245	0.85	+1.0
1,353,089	-		ABZR87_RS22245	0.85	+1.0
1,353,089	-		ABZR87_RS22245	0.85	+1.3
1,353,089	-		ABZR87_RS22245	0.85	+1.6
1,353,089	-		ABZR87_RS22245	0.85	+1.6
1,353,089	-		ABZR87_RS22245	0.85	+2.0
1,353,089	-		ABZR87_RS22245	0.85	-0.5
1,353,089	-		ABZR87_RS22245	0.85	+1.2
1,353,089	-		ABZR87_RS22245	0.85	+0.7
1,353,182	-		ABZR87_RS22245	0.90	+1.1
1,353,182	-		ABZR87_RS22245	0.90	+1.1
1,353,182	-		ABZR87_RS22245	0.90	+0.6
1,353,182	-		ABZR87_RS22245	0.90	+0.9
1,353,182	-		ABZR87_RS22245	0.90	+1.4
1,353,182	-		ABZR87_RS22245	0.90	+1.0
1,353,223	+				+1.7
1,353,238	+				+0.5
1,353,239	-				+1.0
1,353,281	-				+1.1
1,353,363	-				+1.7
1,353,383	+				+1.8
1,353,383	+				+0.9
1,353,383	+				+0.9
1,353,383	+				+0.8
1,353,383	+				+1.3
1,353,383	+				+1.3
1,353,383	+				+0.2
1,353,384	-				-0.3
1,353,384	-				-1.5
1,353,384	-				+0.2
1,353,384	-				+0.4
1,353,384	-				-1.6
1,353,384	-				+0.6
1,353,384	-				-0.5
1,353,384	-				+0.5
1,353,384	-				+1.1
1,353,384	-				-0.3
1,353,384	-				+0.2
1,353,384	-				-0.3
1,353,384	-				+1.3
1,353,384	-				+0.3
1,353,384	-				+0.7
1,353,420	+				+1.6
1,353,420	+				+0.8
1,353,421	-				+0.3
1,353,421	-				-0.8
1,353,421	-				-0.4
1,353,421	-				-0.1
1,353,427	+				+0.2
1,353,428	-				-0.4
1,353,428	-				-0.1
1,353,539	+				+0.7
1,353,539	+				+1.1
1,353,539	+				+1.0
1,353,540	-				+0.8
1,353,558	-				+1.0
1,353,558	-				+1.4
1,353,659	+		ABZR87_RS22250	0.15	+0.4
1,353,659	+		ABZR87_RS22250	0.15	+1.4
1,353,659	+		ABZR87_RS22250	0.15	+1.0
1,353,660	-		ABZR87_RS22250	0.15	+0.8
1,353,690	-		ABZR87_RS22250	0.18	+0.8
1,353,734	+		ABZR87_RS22250	0.22	+0.3
1,353,734	+		ABZR87_RS22250	0.22	-0.1
1,353,735	-		ABZR87_RS22250	0.22	+0.9
1,353,744	+		ABZR87_RS22250	0.23	+0.0
1,353,790	-		ABZR87_RS22250	0.27	+0.8
1,353,790	-		ABZR87_RS22250	0.27	+0.7
1,353,939	-		ABZR87_RS22250	0.41	+0.5
1,353,939	-		ABZR87_RS22250	0.41	+0.9
1,353,939	-		ABZR87_RS22250	0.41	+0.1
1,354,218	+		ABZR87_RS22250	0.66	+0.2
1,354,218	+		ABZR87_RS22250	0.66	+0.5
1,354,219	-		ABZR87_RS22250	0.66	+1.8
1,354,219	-		ABZR87_RS22250	0.66	+1.4
1,354,379	+		ABZR87_RS22250	0.81	+1.6
1,354,379	+		ABZR87_RS22250	0.81	+1.5
1,354,379	+		ABZR87_RS22250	0.81	+1.7
1,354,379	+		ABZR87_RS22250	0.81	+1.3
1,354,379	+		ABZR87_RS22250	0.81	+1.6
1,354,380	-		ABZR87_RS22250	0.81	+1.6
1,354,380	-		ABZR87_RS22250	0.81	+1.3
1,354,380	-		ABZR87_RS22250	0.81	+1.6