Experiment: soil sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16435 and ABZR87_RS16440 are separated by 18 nucleotides ABZR87_RS16440 and ABZR87_RS16445 are separated by 171 nucleotides
ABZR87_RS16435: ABZR87_RS16435 - hypothetical protein, at 40,417 to 41,475
_RS16435
ABZR87_RS16440: ABZR87_RS16440 - hypothetical protein, at 41,494 to 42,051
_RS16440
ABZR87_RS16445: ABZR87_RS16445 - sensor domain-containing diguanylate cyclase, at 42,223 to 43,769
_RS16445
Position (kb) 41
42
43 Strain fitness (log2 ratio) -1
0
1 at 40.511 kb on - strand at 40.511 kb on - strand at 40.513 kb on - strand at 40.531 kb on + strand, within ABZR87_RS16435 at 40.532 kb on - strand, within ABZR87_RS16435 at 40.672 kb on + strand, within ABZR87_RS16435 at 40.672 kb on + strand, within ABZR87_RS16435 at 40.672 kb on + strand, within ABZR87_RS16435 at 40.672 kb on + strand, within ABZR87_RS16435 at 40.720 kb on + strand, within ABZR87_RS16435 at 40.721 kb on - strand, within ABZR87_RS16435 at 40.812 kb on + strand, within ABZR87_RS16435 at 40.857 kb on - strand, within ABZR87_RS16435 at 41.197 kb on + strand, within ABZR87_RS16435 at 41.197 kb on + strand, within ABZR87_RS16435 at 41.198 kb on - strand, within ABZR87_RS16435 at 41.198 kb on - strand, within ABZR87_RS16435 at 41.200 kb on + strand, within ABZR87_RS16435 at 41.201 kb on - strand, within ABZR87_RS16435 at 41.290 kb on + strand, within ABZR87_RS16435 at 41.291 kb on - strand, within ABZR87_RS16435 at 41.291 kb on - strand, within ABZR87_RS16435 at 41.291 kb on - strand, within ABZR87_RS16435 at 41.338 kb on + strand, within ABZR87_RS16435 at 41.339 kb on - strand, within ABZR87_RS16435 at 41.339 kb on - strand, within ABZR87_RS16435 at 41.353 kb on + strand, within ABZR87_RS16435 at 41.353 kb on + strand, within ABZR87_RS16435 at 41.354 kb on - strand, within ABZR87_RS16435 at 41.498 kb on - strand at 41.498 kb on - strand at 41.509 kb on - strand at 41.632 kb on + strand, within ABZR87_RS16440 at 41.632 kb on + strand, within ABZR87_RS16440 at 41.632 kb on + strand, within ABZR87_RS16440 at 41.633 kb on - strand, within ABZR87_RS16440 at 41.641 kb on + strand, within ABZR87_RS16440 at 41.641 kb on + strand, within ABZR87_RS16440 at 41.641 kb on + strand, within ABZR87_RS16440 at 41.642 kb on - strand, within ABZR87_RS16440 at 41.642 kb on - strand, within ABZR87_RS16440 at 41.642 kb on - strand, within ABZR87_RS16440 at 41.642 kb on - strand, within ABZR87_RS16440 at 41.642 kb on - strand, within ABZR87_RS16440 at 41.731 kb on + strand, within ABZR87_RS16440 at 41.753 kb on + strand, within ABZR87_RS16440 at 41.825 kb on - strand, within ABZR87_RS16440 at 41.825 kb on - strand, within ABZR87_RS16440
Per-strain Table
Position Strand Gene LocusTag Fraction soil sample 7; outgrowth in LB remove 40,511 - -0.8 40,511 - -0.3 40,513 - -0.3 40,531 + ABZR87_RS16435 0.11 -0.6 40,532 - ABZR87_RS16435 0.11 +0.3 40,672 + ABZR87_RS16435 0.24 -0.4 40,672 + ABZR87_RS16435 0.24 +0.5 40,672 + ABZR87_RS16435 0.24 -0.2 40,672 + ABZR87_RS16435 0.24 -0.6 40,720 + ABZR87_RS16435 0.29 +0.4 40,721 - ABZR87_RS16435 0.29 +0.6 40,812 + ABZR87_RS16435 0.37 -0.6 40,857 - ABZR87_RS16435 0.42 -0.3 41,197 + ABZR87_RS16435 0.74 +0.0 41,197 + ABZR87_RS16435 0.74 -0.0 41,198 - ABZR87_RS16435 0.74 -0.2 41,198 - ABZR87_RS16435 0.74 +0.4 41,200 + ABZR87_RS16435 0.74 -1.2 41,201 - ABZR87_RS16435 0.74 +1.1 41,290 + ABZR87_RS16435 0.82 +0.0 41,291 - ABZR87_RS16435 0.83 -0.2 41,291 - ABZR87_RS16435 0.83 +0.0 41,291 - ABZR87_RS16435 0.83 +0.2 41,338 + ABZR87_RS16435 0.87 -0.5 41,339 - ABZR87_RS16435 0.87 +0.8 41,339 - ABZR87_RS16435 0.87 -0.1 41,353 + ABZR87_RS16435 0.88 +0.5 41,353 + ABZR87_RS16435 0.88 +0.3 41,354 - ABZR87_RS16435 0.88 +1.1 41,498 - +0.0 41,498 - +0.1 41,509 - -0.3 41,632 + ABZR87_RS16440 0.25 -0.2 41,632 + ABZR87_RS16440 0.25 -0.2 41,632 + ABZR87_RS16440 0.25 +1.1 41,633 - ABZR87_RS16440 0.25 +0.3 41,641 + ABZR87_RS16440 0.26 +1.4 41,641 + ABZR87_RS16440 0.26 -0.1 41,641 + ABZR87_RS16440 0.26 -0.3 41,642 - ABZR87_RS16440 0.27 +0.4 41,642 - ABZR87_RS16440 0.27 -0.2 41,642 - ABZR87_RS16440 0.27 +0.8 41,642 - ABZR87_RS16440 0.27 +0.3 41,642 - ABZR87_RS16440 0.27 -0.1 41,731 + ABZR87_RS16440 0.42 +0.5 41,753 + ABZR87_RS16440 0.46 +0.3 41,825 - ABZR87_RS16440 0.59 -0.1 41,825 - ABZR87_RS16440 0.59 -0.3
Or see this region's nucleotide sequence