Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16355

Experiment: soil sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16350 and ABZR87_RS16355 are separated by 205 nucleotidesABZR87_RS16355 and ABZR87_RS16360 are separated by 127 nucleotidesABZR87_RS16360 and ABZR87_RS16365 are separated by 52 nucleotides ABZR87_RS16350: ABZR87_RS16350 - LysR family transcriptional regulator, at 20,036 to 20,908 _RS16350 ABZR87_RS16355: ABZR87_RS16355 - quinone oxidoreductase, at 21,114 to 22,112 _RS16355 ABZR87_RS16360: ABZR87_RS16360 - YciI family protein, at 22,240 to 22,557 _RS16360 ABZR87_RS16365: ABZR87_RS16365 - ClcB-like voltage-gated chloride channel protein, at 22,610 to 24,013 _RS16365 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1 2 3at 20.292 kb on - strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.316 kb on + strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.317 kb on - strand, within ABZR87_RS16350at 20.418 kb on + strand, within ABZR87_RS16350at 20.419 kb on - strand, within ABZR87_RS16350at 20.419 kb on - strand, within ABZR87_RS16350at 20.419 kb on - strand, within ABZR87_RS16350at 20.419 kb on - strand, within ABZR87_RS16350at 20.629 kb on + strand, within ABZR87_RS16350at 20.629 kb on + strand, within ABZR87_RS16350at 20.630 kb on - strand, within ABZR87_RS16350at 20.630 kb on - strand, within ABZR87_RS16350at 20.630 kb on - strand, within ABZR87_RS16350at 20.630 kb on - strand, within ABZR87_RS16350at 20.630 kb on - strand, within ABZR87_RS16350at 20.887 kb on - strandat 21.088 kb on + strandat 21.252 kb on + strand, within ABZR87_RS16355at 21.253 kb on - strand, within ABZR87_RS16355at 21.253 kb on - strand, within ABZR87_RS16355at 21.322 kb on + strand, within ABZR87_RS16355at 21.322 kb on + strand, within ABZR87_RS16355at 21.323 kb on - strand, within ABZR87_RS16355at 21.323 kb on - strand, within ABZR87_RS16355at 21.323 kb on - strand, within ABZR87_RS16355at 21.408 kb on + strand, within ABZR87_RS16355at 21.408 kb on + strand, within ABZR87_RS16355at 21.408 kb on + strand, within ABZR87_RS16355at 21.529 kb on + strand, within ABZR87_RS16355at 21.552 kb on - strand, within ABZR87_RS16355at 21.942 kb on + strand, within ABZR87_RS16355at 21.943 kb on - strand, within ABZR87_RS16355at 21.943 kb on - strand, within ABZR87_RS16355at 21.943 kb on - strand, within ABZR87_RS16355at 21.963 kb on + strand, within ABZR87_RS16355at 22.029 kb on - strandat 22.032 kb on + strandat 22.032 kb on + strandat 22.032 kb on + strandat 22.032 kb on + strandat 22.032 kb on + strandat 22.032 kb on + strandat 22.033 kb on - strandat 22.033 kb on - strandat 22.033 kb on - strandat 22.149 kb on - strandat 22.214 kb on + strandat 22.214 kb on + strandat 22.214 kb on + strandat 22.214 kb on + strandat 22.214 kb on + strandat 22.215 kb on - strandat 22.215 kb on - strandat 22.246 kb on + strandat 22.247 kb on - strandat 22.247 kb on - strandat 22.247 kb on - strandat 22.247 kb on - strandat 22.264 kb on + strandat 22.264 kb on + strandat 22.265 kb on - strandat 22.265 kb on - strandat 22.331 kb on - strand, within ABZR87_RS16360at 22.479 kb on + strand, within ABZR87_RS16360at 22.479 kb on + strand, within ABZR87_RS16360at 22.479 kb on + strand, within ABZR87_RS16360at 22.479 kb on + strand, within ABZR87_RS16360at 22.480 kb on - strand, within ABZR87_RS16360at 22.480 kb on - strand, within ABZR87_RS16360at 22.480 kb on - strand, within ABZR87_RS16360at 22.480 kb on - strand, within ABZR87_RS16360at 22.480 kb on - strand, within ABZR87_RS16360at 22.555 kb on + strandat 22.556 kb on - strandat 22.556 kb on - strandat 22.578 kb on + strandat 22.578 kb on + strandat 22.579 kb on - strandat 22.579 kb on - strandat 22.798 kb on + strand, within ABZR87_RS16365at 22.798 kb on + strand, within ABZR87_RS16365at 22.799 kb on - strand, within ABZR87_RS16365at 22.885 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.937 kb on + strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.938 kb on - strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.939 kb on + strand, within ABZR87_RS16365at 22.940 kb on - strand, within ABZR87_RS16365at 22.940 kb on - strand, within ABZR87_RS16365at 22.940 kb on - strand, within ABZR87_RS16365at 22.992 kb on + strand, within ABZR87_RS16365at 22.993 kb on - strand, within ABZR87_RS16365

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 7; outgrowth in LB
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20,292 - ABZR87_RS16350 0.29 +1.1
20,316 + ABZR87_RS16350 0.32 -0.9
20,316 + ABZR87_RS16350 0.32 -0.4
20,316 + ABZR87_RS16350 0.32 -0.9
20,316 + ABZR87_RS16350 0.32 -0.8
20,316 + ABZR87_RS16350 0.32 -0.1
20,316 + ABZR87_RS16350 0.32 +0.5
20,316 + ABZR87_RS16350 0.32 -0.3
20,316 + ABZR87_RS16350 0.32 -0.4
20,316 + ABZR87_RS16350 0.32 +0.1
20,317 - ABZR87_RS16350 0.32 +0.2
20,317 - ABZR87_RS16350 0.32 -0.4
20,317 - ABZR87_RS16350 0.32 -0.8
20,317 - ABZR87_RS16350 0.32 +0.0
20,317 - ABZR87_RS16350 0.32 +0.5
20,317 - ABZR87_RS16350 0.32 -0.4
20,317 - ABZR87_RS16350 0.32 -0.6
20,418 + ABZR87_RS16350 0.44 -0.4
20,419 - ABZR87_RS16350 0.44 -0.2
20,419 - ABZR87_RS16350 0.44 -0.4
20,419 - ABZR87_RS16350 0.44 +0.2
20,419 - ABZR87_RS16350 0.44 -0.4
20,629 + ABZR87_RS16350 0.68 +0.9
20,629 + ABZR87_RS16350 0.68 -0.4
20,630 - ABZR87_RS16350 0.68 -0.5
20,630 - ABZR87_RS16350 0.68 +0.0
20,630 - ABZR87_RS16350 0.68 -0.3
20,630 - ABZR87_RS16350 0.68 +0.0
20,630 - ABZR87_RS16350 0.68 +0.3
20,887 - +1.2
21,088 + -0.9
21,252 + ABZR87_RS16355 0.14 -0.4
21,253 - ABZR87_RS16355 0.14 +0.8
21,253 - ABZR87_RS16355 0.14 +0.1
21,322 + ABZR87_RS16355 0.21 -1.1
21,322 + ABZR87_RS16355 0.21 -0.6
21,323 - ABZR87_RS16355 0.21 -0.8
21,323 - ABZR87_RS16355 0.21 +0.6
21,323 - ABZR87_RS16355 0.21 -0.3
21,408 + ABZR87_RS16355 0.29 -0.4
21,408 + ABZR87_RS16355 0.29 -0.7
21,408 + ABZR87_RS16355 0.29 +1.4
21,529 + ABZR87_RS16355 0.42 -0.0
21,552 - ABZR87_RS16355 0.44 -0.6
21,942 + ABZR87_RS16355 0.83 -0.1
21,943 - ABZR87_RS16355 0.83 -1.2
21,943 - ABZR87_RS16355 0.83 +1.0
21,943 - ABZR87_RS16355 0.83 -0.4
21,963 + ABZR87_RS16355 0.85 -0.4
22,029 - +0.2
22,032 + +0.4
22,032 + -0.5
22,032 + -0.3
22,032 + -0.3
22,032 + -0.1
22,032 + -0.0
22,033 - -0.1
22,033 - -0.1
22,033 - +0.1
22,149 - -0.1
22,214 + +1.4
22,214 + -0.6
22,214 + +1.4
22,214 + -0.6
22,214 + +0.2
22,215 - -0.1
22,215 - +1.5
22,246 + +0.2
22,247 - +0.7
22,247 - -0.1
22,247 - +0.8
22,247 - +1.3
22,264 + -0.3
22,264 + -0.0
22,265 - -1.0
22,265 - -0.8
22,331 - ABZR87_RS16360 0.29 +0.6
22,479 + ABZR87_RS16360 0.75 -0.8
22,479 + ABZR87_RS16360 0.75 -0.0
22,479 + ABZR87_RS16360 0.75 -0.1
22,479 + ABZR87_RS16360 0.75 +1.1
22,480 - ABZR87_RS16360 0.75 -0.0
22,480 - ABZR87_RS16360 0.75 -0.2
22,480 - ABZR87_RS16360 0.75 +0.4
22,480 - ABZR87_RS16360 0.75 -0.3
22,480 - ABZR87_RS16360 0.75 +0.1
22,555 + +1.0
22,556 - +0.3
22,556 - +0.8
22,578 + +0.2
22,578 + -0.2
22,579 - +0.2
22,579 - +0.2
22,798 + ABZR87_RS16365 0.13 -0.2
22,798 + ABZR87_RS16365 0.13 +0.2
22,799 - ABZR87_RS16365 0.13 +0.5
22,885 + ABZR87_RS16365 0.20 -0.6
22,937 + ABZR87_RS16365 0.23 +1.0
22,937 + ABZR87_RS16365 0.23 -0.6
22,937 + ABZR87_RS16365 0.23 -0.6
22,937 + ABZR87_RS16365 0.23 -2.0
22,937 + ABZR87_RS16365 0.23 +0.4
22,937 + ABZR87_RS16365 0.23 +0.4
22,938 - ABZR87_RS16365 0.23 -0.9
22,938 - ABZR87_RS16365 0.23 -0.3
22,938 - ABZR87_RS16365 0.23 +0.1
22,938 - ABZR87_RS16365 0.23 +0.2
22,938 - ABZR87_RS16365 0.23 -0.6
22,938 - ABZR87_RS16365 0.23 -0.3
22,939 + ABZR87_RS16365 0.23 +0.6
22,939 + ABZR87_RS16365 0.23 +0.3
22,939 + ABZR87_RS16365 0.23 +0.1
22,939 + ABZR87_RS16365 0.23 +0.4
22,939 + ABZR87_RS16365 0.23 +0.2
22,939 + ABZR87_RS16365 0.23 +0.4
22,940 - ABZR87_RS16365 0.24 +0.4
22,940 - ABZR87_RS16365 0.24 -0.1
22,940 - ABZR87_RS16365 0.24 +0.0
22,992 + ABZR87_RS16365 0.27 -0.1
22,993 - ABZR87_RS16365 0.27 +2.8

Or see this region's nucleotide sequence