Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11345

Experiment: soil sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11340 and ABZR87_RS11345 are separated by 93 nucleotidesABZR87_RS11345 and ABZR87_RS11350 are separated by 41 nucleotidesABZR87_RS11350 and ABZR87_RS11355 are separated by 3 nucleotidesABZR87_RS11355 and ABZR87_RS11360 are separated by 24 nucleotides ABZR87_RS11340: ABZR87_RS11340 - asparaginase, at 2,406,259 to 2,407,251 _RS11340 ABZR87_RS11345: ABZR87_RS11345 - 30S ribosomal protein S6, at 2,407,345 to 2,407,713 _RS11345 ABZR87_RS11350: ABZR87_RS11350 - primosomal replication protein N, at 2,407,755 to 2,408,081 _RS11350 ABZR87_RS11355: ABZR87_RS11355 - 30S ribosomal protein S18, at 2,408,085 to 2,408,372 _RS11355 ABZR87_RS11360: ABZR87_RS11360 - 50S ribosomal protein L9, at 2,408,397 to 2,408,849 _RS11360 Position (kb) 2407 2408Strain fitness (log2 ratio) -2 -1 0 1at 2406.464 kb on + strand, within ABZR87_RS11340at 2406.464 kb on + strand, within ABZR87_RS11340at 2406.487 kb on - strand, within ABZR87_RS11340at 2406.487 kb on - strand, within ABZR87_RS11340at 2406.594 kb on + strand, within ABZR87_RS11340at 2406.605 kb on + strand, within ABZR87_RS11340at 2406.605 kb on + strand, within ABZR87_RS11340at 2406.605 kb on + strand, within ABZR87_RS11340at 2406.772 kb on + strand, within ABZR87_RS11340at 2406.772 kb on + strand, within ABZR87_RS11340at 2406.772 kb on + strand, within ABZR87_RS11340at 2406.772 kb on + strand, within ABZR87_RS11340at 2406.773 kb on - strand, within ABZR87_RS11340at 2406.773 kb on - strand, within ABZR87_RS11340at 2406.773 kb on - strand, within ABZR87_RS11340at 2406.773 kb on - strand, within ABZR87_RS11340at 2406.773 kb on - strand, within ABZR87_RS11340at 2406.931 kb on + strand, within ABZR87_RS11340at 2406.931 kb on + strand, within ABZR87_RS11340at 2406.932 kb on - strand, within ABZR87_RS11340at 2406.932 kb on - strand, within ABZR87_RS11340at 2407.159 kb on + strandat 2407.159 kb on + strandat 2407.159 kb on + strandat 2407.159 kb on + strandat 2407.160 kb on - strandat 2407.160 kb on - strandat 2407.160 kb on - strandat 2407.160 kb on - strandat 2407.160 kb on - strandat 2407.160 kb on - strandat 2407.160 kb on - strandat 2407.160 kb on - strandat 2407.160 kb on - strandat 2407.161 kb on + strandat 2407.161 kb on + strandat 2407.161 kb on + strandat 2407.162 kb on - strandat 2407.162 kb on - strandat 2407.162 kb on - strandat 2407.272 kb on + strandat 2408.349 kb on + strandat 2408.370 kb on + strandat 2408.371 kb on - strandat 2408.405 kb on + strandat 2408.406 kb on - strandat 2408.477 kb on + strand, within ABZR87_RS11360at 2408.477 kb on + strand, within ABZR87_RS11360

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 7; outgrowth in LB
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2,406,464 + ABZR87_RS11340 0.21 +0.8
2,406,464 + ABZR87_RS11340 0.21 -0.5
2,406,487 - ABZR87_RS11340 0.23 -0.3
2,406,487 - ABZR87_RS11340 0.23 -0.0
2,406,594 + ABZR87_RS11340 0.34 -0.4
2,406,605 + ABZR87_RS11340 0.35 +0.0
2,406,605 + ABZR87_RS11340 0.35 -0.5
2,406,605 + ABZR87_RS11340 0.35 +0.0
2,406,772 + ABZR87_RS11340 0.52 -0.3
2,406,772 + ABZR87_RS11340 0.52 +1.1
2,406,772 + ABZR87_RS11340 0.52 +0.2
2,406,772 + ABZR87_RS11340 0.52 -0.0
2,406,773 - ABZR87_RS11340 0.52 -0.8
2,406,773 - ABZR87_RS11340 0.52 +0.4
2,406,773 - ABZR87_RS11340 0.52 -0.3
2,406,773 - ABZR87_RS11340 0.52 -0.4
2,406,773 - ABZR87_RS11340 0.52 +0.5
2,406,931 + ABZR87_RS11340 0.68 -0.4
2,406,931 + ABZR87_RS11340 0.68 -0.5
2,406,932 - ABZR87_RS11340 0.68 +0.4
2,406,932 - ABZR87_RS11340 0.68 -1.4
2,407,159 + -0.4
2,407,159 + +0.7
2,407,159 + -0.7
2,407,159 + -0.0
2,407,160 - -2.2
2,407,160 - +0.1
2,407,160 - -1.7
2,407,160 - -0.4
2,407,160 - +0.0
2,407,160 - -0.8
2,407,160 - +0.2
2,407,160 - +1.3
2,407,160 - -1.0
2,407,161 + +0.5
2,407,161 + +0.3
2,407,161 + -0.6
2,407,162 - -1.4
2,407,162 - +0.6
2,407,162 - -0.3
2,407,272 + +0.2
2,408,349 + -0.9
2,408,370 + +0.8
2,408,371 - -1.7
2,408,405 + +1.2
2,408,406 - +0.5
2,408,477 + ABZR87_RS11360 0.18 +0.2
2,408,477 + ABZR87_RS11360 0.18 -0.0

Or see this region's nucleotide sequence