Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11335

Experiment: soil sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11330 and ABZR87_RS11335 are separated by 253 nucleotidesABZR87_RS11335 and ABZR87_RS11340 are separated by 137 nucleotides ABZR87_RS11330: ABZR87_RS11330 - transcriptional repressor LexA, at 2,404,441 to 2,405,091 _RS11330 ABZR87_RS11335: ABZR87_RS11335 - ferredoxin--NADP reductase, at 2,405,345 to 2,406,121 _RS11335 ABZR87_RS11340: ABZR87_RS11340 - asparaginase, at 2,406,259 to 2,407,251 _RS11340 Position (kb) 2405 2406 2407Strain fitness (log2 ratio) -3 -2 -1 0 1at 2404.442 kb on + strandat 2404.442 kb on + strandat 2404.443 kb on - strandat 2404.754 kb on + strand, within ABZR87_RS11330at 2404.755 kb on - strand, within ABZR87_RS11330at 2404.755 kb on - strand, within ABZR87_RS11330at 2404.755 kb on - strand, within ABZR87_RS11330at 2405.057 kb on + strandat 2405.057 kb on + strandat 2405.102 kb on + strandat 2405.103 kb on - strandat 2405.103 kb on - strandat 2405.103 kb on - strandat 2405.105 kb on - strandat 2405.127 kb on + strandat 2405.129 kb on + strandat 2405.210 kb on - strandat 2405.210 kb on - strandat 2405.229 kb on + strandat 2405.229 kb on + strandat 2405.229 kb on + strandat 2405.230 kb on - strandat 2405.269 kb on - strandat 2406.119 kb on + strandat 2406.120 kb on - strandat 2406.120 kb on - strandat 2406.120 kb on - strandat 2406.270 kb on + strandat 2406.270 kb on + strandat 2406.464 kb on + strand, within ABZR87_RS11340at 2406.464 kb on + strand, within ABZR87_RS11340at 2406.487 kb on - strand, within ABZR87_RS11340at 2406.487 kb on - strand, within ABZR87_RS11340at 2406.594 kb on + strand, within ABZR87_RS11340at 2406.605 kb on + strand, within ABZR87_RS11340at 2406.605 kb on + strand, within ABZR87_RS11340at 2406.605 kb on + strand, within ABZR87_RS11340at 2406.772 kb on + strand, within ABZR87_RS11340at 2406.772 kb on + strand, within ABZR87_RS11340at 2406.772 kb on + strand, within ABZR87_RS11340at 2406.772 kb on + strand, within ABZR87_RS11340at 2406.773 kb on - strand, within ABZR87_RS11340at 2406.773 kb on - strand, within ABZR87_RS11340at 2406.773 kb on - strand, within ABZR87_RS11340at 2406.773 kb on - strand, within ABZR87_RS11340at 2406.773 kb on - strand, within ABZR87_RS11340at 2406.931 kb on + strand, within ABZR87_RS11340at 2406.931 kb on + strand, within ABZR87_RS11340at 2406.932 kb on - strand, within ABZR87_RS11340at 2406.932 kb on - strand, within ABZR87_RS11340

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Per-strain Table

Position Strand Gene LocusTag Fraction soil sample 7; outgrowth in LB
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2,404,442 + -0.8
2,404,442 + -0.1
2,404,443 - -0.7
2,404,754 + ABZR87_RS11330 0.48 -2.2
2,404,755 - ABZR87_RS11330 0.48 -3.6
2,404,755 - ABZR87_RS11330 0.48 -2.1
2,404,755 - ABZR87_RS11330 0.48 -2.7
2,405,057 + -0.1
2,405,057 + -1.8
2,405,102 + -0.9
2,405,103 - -0.6
2,405,103 - -0.0
2,405,103 - -1.9
2,405,105 - -0.1
2,405,127 + -0.1
2,405,129 + +0.6
2,405,210 - -0.8
2,405,210 - -1.9
2,405,229 + +0.2
2,405,229 + -1.1
2,405,229 + +1.0
2,405,230 - +0.6
2,405,269 - -0.7
2,406,119 + -2.0
2,406,120 - +0.2
2,406,120 - +0.4
2,406,120 - -0.5
2,406,270 + -0.7
2,406,270 + +0.3
2,406,464 + ABZR87_RS11340 0.21 +0.8
2,406,464 + ABZR87_RS11340 0.21 -0.5
2,406,487 - ABZR87_RS11340 0.23 -0.3
2,406,487 - ABZR87_RS11340 0.23 -0.0
2,406,594 + ABZR87_RS11340 0.34 -0.4
2,406,605 + ABZR87_RS11340 0.35 +0.0
2,406,605 + ABZR87_RS11340 0.35 -0.5
2,406,605 + ABZR87_RS11340 0.35 +0.0
2,406,772 + ABZR87_RS11340 0.52 -0.3
2,406,772 + ABZR87_RS11340 0.52 +1.1
2,406,772 + ABZR87_RS11340 0.52 +0.2
2,406,772 + ABZR87_RS11340 0.52 -0.0
2,406,773 - ABZR87_RS11340 0.52 -0.8
2,406,773 - ABZR87_RS11340 0.52 +0.4
2,406,773 - ABZR87_RS11340 0.52 -0.3
2,406,773 - ABZR87_RS11340 0.52 -0.4
2,406,773 - ABZR87_RS11340 0.52 +0.5
2,406,931 + ABZR87_RS11340 0.68 -0.4
2,406,931 + ABZR87_RS11340 0.68 -0.5
2,406,932 - ABZR87_RS11340 0.68 +0.4
2,406,932 - ABZR87_RS11340 0.68 -1.4

Or see this region's nucleotide sequence